Browse Element(s) Details


OsAffx.13580.1.S1_at

Description tigr:9631.m06136
TID=OsAffx.13580.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6213011/11DnaJ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62090Os.4857.1.S1_at10/113+35116690..35122248Cellulose synthase A catalytic subunit 6, putative, expressed
LOC_Os03g62100OsAffx.13578.1.S1_at11/113+35128356..35129480Myb-like DNA-binding domain containing protein
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein
LOC_Os03g62130OsAffx.13580.1.S1_at11/113+35141491..35142321DnaJ domain containing protein
LOC_Os03g62140OsAffx.3669.1.S1_at11/113+35144660..35145523DnaJ domain containing protein
LOC_Os03g62150OsAffx.13581.1.S1_at11/113+35146476..35147264DnaJ domain containing protein
LOC_Os03g62160Os.7347.1.S1_at11/113+35147432..35150284expressed protein
LOC_Os03g62160Os.17465.1.S1_x_at1/113+35147432..35150284expressed protein
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g62180Os.18773.1.S1_at10/113+35158306..35161738lectin protein kinase family protein, putative, expressed
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13580.1.S1_at--221--7171Chr03:35141925..35141949 (25 bp)
GTCTCCTTCGGTAAGCTGTCCGCCA
LOC_Os03g62130
OsAffx.13580.1.S1_at--565--4651Chr03:35141976..35142000 (25 bp)
GCGTCGCATCTCCTGCCGGAAATGC
LOC_Os03g62130
OsAffx.13580.1.S1_at--711--5571Chr03:35141994..35142018 (25 bp)
GAAATGCCGCGGCTCGTTCTTCACG
LOC_Os03g62130
OsAffx.13580.1.S1_at--988--1971Chr03:35142056..35142080 (25 bp)
ACTGCAACCGCTGGGTGAGCTTGTT
LOC_Os03g62130
OsAffx.13580.1.S1_at--903--6151Chr03:35142114..35142138 (25 bp)
GAGGTTCACGGAGACTGTGTCCACC
LOC_Os03g62130
OsAffx.13580.1.S1_at--603--1931Chr03:35142121..35142145 (25 bp)
ACGGAGACTGTGTCCACCGGAACGC
LOC_Os03g62130
OsAffx.13580.1.S1_at--655--4471Chr03:35142163..35142187 (25 bp)
GCCTGCGAGAGGAGCTCCTACGTCT
LOC_Os03g62130
OsAffx.13580.1.S1_at--680--5891Chr03:35142174..35142198 (25 bp)
GAGCTCCTACGTCTTCGTCAAGAAC
LOC_Os03g62130
OsAffx.13580.1.S1_at--83--9151Chr03:35142205..35142229 (25 bp)
TGCGCCACCTCCTGGATAACCGGAT
LOC_Os03g62130
OsAffx.13580.1.S1_at--880--7951Chr03:35142218..35142242 (25 bp)
GGATAACCGGATCTTCATATCGATT
LOC_Os03g62130
OsAffx.13580.1.S1_at--1025--5511Chr03:35142257..35142281 (25 bp)
GAAAACCATTTAGTGCTCCGACTCC
LOC_Os03g62130
Target Sequence 
GTCTCCTTCGGTAAGCTGTCCGCCACCGCCGCCGCCGCCGCCGCCAGGGCCGCGTCGCATCTCCTGCCGGAAATGCCGCG
GCTCGTTCTTCACGGTGGTCGGCGACGGCGTCTCCGGCGTGAACTGCGTCCACTGCAACCGCTGGGTGAGCTTGTTCCCG
TGCCCCGCTCGCTGTGCGAGGTGCGGCGTGAGGTTCACGGAGACTGTGTCCACCGGAACGCGTCTCCTCCGGTGCGCCGC
CTGCGAGAGGAGCTCCTACGTCTTCGTCAAGAACCCCTACTGCGCCACCTCCTGGATAACCGGATCTTCATATCGATTAA
AATGTTGTCGAAGAAAACCATTTAGTGCTCCGACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis