Browse Element(s) Details


OsAffx.13602.1.S1_at

Description tigr:9631.m06404
TID=OsAffx.13602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=APETALA2-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6043011/11Floral homeotic protein APETALA2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein
LOC_Os03g60460Os.15432.1.S1_at10/113+34317091..34321293Peptidase family M1 containing protein, expressed
LOC_Os03g60470Os.53476.1.S1_at11/113+34321693..34323295expressed protein
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009408biological_processresponse to heat
GO:0009887biological_processorgan morphogenesis
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0019953biological_processsexual reproduction
GO:0030154biological_processcell differentiation
GO:0048316biological_processseed development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13602.1.S1_at--1152--1071Chr03:34299388..34299412 (25 bp)
AGGGCAGCTATTCGCTTCAATGGGA
LOC_Os03g60430
OsAffx.13602.1.S1_at--254--7611Chr03:34299413..34299437 (25 bp)
GGGAAGCTGTTACCAACTTCGAGCC
LOC_Os03g60430
OsAffx.13602.1.S1_at--555--9371Chr03:34299431..34299455 (25 bp)
TCGAGCCTGCATCCTACAATGTGGA
LOC_Os03g60430
OsAffx.13602.1.S1_at--1117--7951Chr03:34299453..34299477 (25 bp)
GGATGCTTTACCAGACGCCGGAAAT
LOC_Os03g60430
OsAffx.13602.1.S1_at--597--2631Chr03:34299615..34299639 (25 bp)
AACCTAATGCGCGTGACTCCAAAAG
LOC_Os03g60430
OsAffx.13602.1.S1_at--637--1951Chr03:34299653..34299677 (25 bp)
ACTGGCCTCCAGTTAACTTGTGATT
LOC_Os03g60430
OsAffx.13602.1.S1_at--411--2251Chr03:34299691..34300004 (25 bp)
AAATATTACAGTCCACCAGCCAATG
LOC_Os03g60430
OsAffx.13602.1.S1_at--417--9651Chr03:34300055..34300079 (25 bp)
TCAGCATCAACGTTTGTACCCATCT
LOC_Os03g60430
OsAffx.13602.1.S1_at--846--8751Chr03:34300069..34300093 (25 bp)
TGTACCCATCTCATTGTCTTGGCTT
LOC_Os03g60430
OsAffx.13602.1.S1_at--444--2151Chr03:34300816..34300840 (25 bp)
ACAGAAGGCCTGAGCTGGGTCCCAT
LOC_Os03g60430
OsAffx.13602.1.S1_at--709--911Chr03:34300855..34300879 (25 bp)
AGGCTTGGCAAATGCAGGCCCCTTC
LOC_Os03g60430
Target Sequence 
AGGGCAGCTATTCGCTTCAATGGGAGGGAAGCTGTTACCAACTTCGAGCCTGCATCCTACAATGTGGATGCTTTACCAGA
CGCCGGAAATGAGGCAATTGTTGATGGCGATCTTGATTTGGATTTGCGGATTTCGCAACCTAATGCGCGTGACTCCAAAA
GCGATGTCGCCACAACTGGCCTCCAGTTAACTTGTGATTCCCCTGAATCTTCAAATATTACAGTCCACCAGCCAATGGGC
TCGTCTCCCCAATGGACTGTGCATCACCAAAGCACACCACTGCCCCCTCAGCATCAACGTTTGTACCCATCTCATTGTCT
TGGCTTCCTCCCGAACCTACAGATTCAGATACTGTTTAAAAGCTTGAGAGGCCAATGGACAGAAGGCCTGAGCTGGGTCC
CATGCCGTTCCCAACACAGGCTTGGCAAATGCAGGCCCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis