Browse Element(s) Details


OsAffx.13603.1.S1_at

Description tigr:9631.m06407
TID=OsAffx.13603.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0362011/11glycosyl transferase family 48 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03600Os.5826.2.S1_a_at11/113+1557698..1559253Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03620OsAffx.13603.1.S1_at11/113+1577054..1580404glycosyl transferase family 48 protein, putative, expressed
LOC_Os03g03630Os.4320.1.S1_at11/113+1586374..1587346expressed protein
LOC_Os03g03640Os.4321.1.S1_at11/113+1588134..1590083expressed protein
LOC_Os03g03650Os.4685.1.S1_at11/113+1590668..1594786DNA polymerase delta small subunit, putative, expressed
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13603.1.S1_at--687--7911Chr03:1578768..1579264 (25 bp)
GGTTGCATACCTCTGTCGATTCTAT
LOC_Os03g03620
OsAffx.13603.1.S1_at--437--2931Chr03:1578734..1578758 (25 bp)
AAGGCTCACAGGTTAGATCCAACTT
LOC_Os03g03620
OsAffx.13603.1.S1_at--770--7251Chr03:1578695..1578719 (25 bp)
GTCCGGCAATTCAAGACGGCTCTTT
LOC_Os03g03620
OsAffx.13603.1.S1_at--590--1911Chr03:1578680..1578704 (25 bp)
ACGGCTCTTTTGCAACGGCTTGAAA
LOC_Os03g03620
OsAffx.13603.1.S1_at--228--5951Chr03:1578229..1578253 (25 bp)
GAGAATGAACCCACCTTGAGAGGAA
LOC_Os03g03620
OsAffx.13603.1.S1_at--679--2111Chr03:1578176..1578200 (25 bp)
ACAGGCCTTCTATCAACACTATTAT
LOC_Os03g03620
OsAffx.13603.1.S1_at--1073--2711Chr03:1578138..1578162 (25 bp)
AAGCACTTCAAAATGTCTCCGACCA
LOC_Os03g03620
OsAffx.13603.1.S1_at--264--2871Chr03:1578044..1578138 (25 bp)
AAGTGGATCGTGCTCAACTTACCAA
LOC_Os03g03620
OsAffx.13603.1.S1_at--886--911Chr03:1577981..1578005 (25 bp)
AGGCAGTCACTCAACAGCATTCTGT
LOC_Os03g03620
OsAffx.13603.1.S1_at--40--3531Chr03:1577814..1577834 (21 bp)
CATGAGATCTTGGAAGCCGCTGATA
LOC_Os03g03620
OsAffx.13603.1.S1_at--208--251Chr03:1577753..1577777 (25 bp)
ATATACTCCCTCTTGATCCAGACAG
LOC_Os03g03620
Target Sequence 
GGTTGCATACCTCTGTCGATTCTATGCATTTGAAAAGGCTCACAGGTTAGATCCAACTTCAAGTGGCCGGGGTGTCCGGC
AATTCAAGACGGCTCTTTTGCAACGGCTTGAAAGGGAGAATGAACCCACCTTGAGAGGAAGGGCCCGCAAGAGTGATGCA
CGGGAAATACAGGCCTTCTATCAACACTATTATAAGAAATATATTCAAGCACTTCAAAATGTCTCCGACCAAGTGGATCG
TGCTCAACTTACCAAGGCATACCAGACTGCTAATGTTCTATTTGAGGTTTTAAAGGCAGTCACTCAACAGCATTCTGTTG
AAGTTGACCATGAGATCTTGGAAGCCGCTGATAAAGTTAAAGAGAAGACAAAGATATATCTCCCTTTCAATATACTCCCT
CTTGATCCAGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis