Browse Element(s) Details


OsAffx.13628.1.S1_s_at

Description tigr:9632.m00190
TID=OsAffx.13628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PPIC-type PPIASE domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0283011/11Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02780Os.9698.1.S1_at11/114+1060492..1063545amidase family protein, putative, expressed
LOC_Os04g02790NANA4+1071751..1072062hypothetical protein
LOC_Os04g02800NANA4+1074546..1075067retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.49936.2.A1_at3/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.33601.3.S1_x_at1/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02820Os.28160.1.S1_at11/114+1080525..1085753Elongation factor 2, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_s_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02840Os.45173.1.S1_x_at6/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02840OsAffx.20877.1.S1_at1/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02850OsAffx.13629.1.S1_at11/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02850OsAffx.13326.1.S1_at1/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02860Os.38425.1.S1_at11/114+1100505..1105865NB-ARC domain containing protein, expressed
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13628.1.S1_s_at--409--8891Chr04:1089244..1089268 (25 bp)
TGAGGGCGTTGCACATCCTGATCAA
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--258--2951Chr04:1089200..1089224 (25 bp)
AAGGCCTCCTGGAAGGATCCCGACG
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--60--711Chr04:1087604..1087628 (25 bp)
ATGAGTGACACTGTGGACACTGACA
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--871--5651Chr04:1087583..1087607 (25 bp)
GACAGTGGTGTTCACATCATCCTGC
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--624--3291Chr04:1087514..1087538 (25 bp)
CAAATGTTATTTTCTGGTAGCCTAA
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--395--9451Chr04:1087502..1087526 (25 bp)
TCTGGTAGCCTAAAACTTCAAATCA
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--376--2271Chr04:1087477..1087501 (25 bp)
AAATGAACCCTGTAACGAATATGAT
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--539--5231Chr04:1087461..1087485 (25 bp)
GAATATGATATGTTCCGCGACCCGC
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--788--5811Chr04:1087443..1087467 (25 bp)
GACCCGCTTTTGTTTCGACATTTGA
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--265--9371Chr04:1087429..1087453 (25 bp)
TCGACATTTGAGCACATGGTATGGC
LOC_Os04g02830
OsAffx.13628.1.S1_s_at--204--811Chr04:1087414..1087438 (25 bp)
ATGGTATGGCATGTTTCCGTGATGA
LOC_Os04g02830
Target Sequence 
TGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATC
TCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAACTTCGC
CGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCGCCGTGGCGGCGACCTGGGCACTTTTGGGAGGAGGCAGATGC
AGAAACCCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCAC
ATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAATGTTATTTTCTGGTAGCCTAAA
ACTTCAAATCAAAATGAACCCTGTAACGAATATGATATGTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTA
TGGCATGTTTCCGTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13628.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis