Browse Element(s) Details


OsAffx.13649.1.S1_at

Description tigr:9632.m00295
TID=OsAffx.13649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0387011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03860Os.47910.1.S1_at11/114+1741578..1746940expressed protein
LOC_Os04g03870OsAffx.13649.1.S1_at11/114+1754143..1755585Cytochrome P450 family protein, expressed
LOC_Os04g03880OsAffx.13650.1.S1_at11/114+1757251..1761044hypothetical protein
LOC_Os04g03884Os.49504.1.S1_at11/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03884Os.51175.1.S1_x_at6/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03890OsAffx.25857.1.S1_at11/114+1767030..1768484Cytochrome P450 family protein
LOC_Os04g03910OsAffx.3714.1.S1_at11/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.48715.1.A1_x_at4/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_x_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03920Os.54951.1.S1_at11/114+1778564..1780107expressed protein
LOC_Os04g03930OsAffx.3715.1.S1_at11/114+1780402..1782118hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13649.1.S1_at--1051--4571Chr04:1754691..1754715 (25 bp)
GCGCACCTCGTCATCGAGCCGGAAA
LOC_Os04g03870
OsAffx.13649.1.S1_at--277--9351Chr04:1754678..1754702 (25 bp)
TCGAGCCGGAAATCCAGGACAAGCT
LOC_Os04g03870
OsAffx.13649.1.S1_at--390--5591Chr04:1754670..1754694 (25 bp)
GAAATCCAGGACAAGCTGTGCCGCC
LOC_Os04g03870
OsAffx.13649.1.S1_at--1141--931Chr04:1754663..1754687 (25 bp)
AGGACAAGCTGTGCCGCCAGGTCGT
LOC_Os04g03870
OsAffx.13649.1.S1_at--974--7771Chr04:1754548..1754572 (25 bp)
GGTGCCGCTGACCATGCGCGACGTC
LOC_Os04g03870
OsAffx.13649.1.S1_at--322--7331Chr04:1754472..1754496 (25 bp)
GTGCACTTCATCCTCGGGGACATTG
LOC_Os04g03870
OsAffx.13649.1.S1_at--463--5171Chr04:1754438..1754462 (25 bp)
GCAAGGCGTGGACGGATCCCGACGA
LOC_Os04g03870
OsAffx.13649.1.S1_at--924--4711Chr04:1754257..1754281 (25 bp)
GCTGGTGCGCGAGTTTGAGTGGGCT
LOC_Os04g03870
OsAffx.13649.1.S1_at--88--4631Chr04:1754249..1754273 (25 bp)
GCGAGTTTGAGTGGGCTCCGACGGC
LOC_Os04g03870
OsAffx.13649.1.S1_at--518--8211Chr04:1754218..1754242 (25 bp)
GGCGACCGGCGGTGTGGACTTGACG
LOC_Os04g03870
OsAffx.13649.1.S1_at--945--5671Chr04:1754202..1754226 (25 bp)
GACTTGACGGAGGTGAACGGCTTCT
LOC_Os04g03870
Target Sequence 
GCGCACCTCGTCATCGAGCCGGAAATCCAGGACAAGCTGTGCCGCCAGGTCGTCGCCGCCGCCGACCACCACGGCGGCGA
GCGCGGCACCACGCCGGCGTACCTCCGCGCCGTGATCCTCGAGAGCCTCCGCATGCACCCGCCGGTGCCGCTGACCATGC
GCGACGTCCGCTCGCCGCAGGCGGTCGAACACCTTTCCCTGCCGGACGGCGGCGCGCGGGTGCACTTCATCCTCGGGGAC
ATTGGGCGGGACGGCAAGGCGTGGACGGATCCCGACGAGTTCCGGCCGGAGAGGTTCATGGCCGGCGGCGAGGCGGAGGG
GGTGGGCCCGCTGCCGGGGCCGAGGGAGGTGAGGATGATGCCGTTCGGCGCGGGGCGGAGGTATTGCCCCGGCATGGGGC
TCGGGGTGGCGCACGCCTGCCTCTTGGTGGCGGCGCTGGTGCGCGAGTTTGAGTGGGCTCCGACGGCGGTGGCGGCGACC
GGCGGTGTGGACTTGACGGAGGTGAACGGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis