Browse Element(s) Details


OsAffx.13703.1.S1_x_at

Description tigr:9632.m00638
TID=OsAffx.13703.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0726011/11hypothetical protein
LOC_Os04g0713011/11hypothetical protein
LOC_Os04g071703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g079201/11hypothetical protein
LOC_Os04g078301/11hypothetical protein
LOC_Os04g070501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07220OsAffx.25905.1.S1_at10/114+3815595..3816837hypothetical protein
LOC_Os04g07230NANA4+3823207..3824428retrotransposon protein, putative, unclassified
LOC_Os04g07240OsAffx.3761.1.S1_x_at2/114+3828415..3831227hypothetical protein
LOC_Os04g07250OsAffx.25903.4.S1_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07250OsAffx.25903.5.S1_s_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07260OsAffx.13703.1.S1_x_at11/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_x_at10/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_at8/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.26930.1.S2_x_at1/114+3840464..3845035hypothetical protein
LOC_Os04g07269OsAffx.1198.1.S1_at1/114+3848303..3849160NA
LOC_Os04g07280Os.47568.1.A1_s_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_x_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.30400.1.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_at1/114+3853075..3856415expressed protein
LOC_Os04g07290OsAffx.21897.5.S1_x_at4/114+3858503..3861427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07300NANA4+3861743..3867852retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13703.1.S1_x_at--992--2594Chr04:4213420..4213444 (25 bp)
AACGCTGCTGATACGTACCAAGAAG
LOC_Os04g07920
OsAffx.13703.1.S1_x_at--40--4753Chr04:3844520..3844544 (25 bp)
GCTGATACGTACCAAGAAGTAGCAA
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--860--6953Chr04:3844528..3844552 (25 bp)
GTACCAAGAAGTAGCAAGGAAGCAA
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--290--10252Chr04:3844597..3844621 (25 bp)
TTTGGTGGTCATGAATGCTGCCGAT
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--883--4772Chr04:3844613..3844637 (25 bp)
GCTGCCGATACATACCAACTAGAAG
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--256--4052Chr04:3844618..3844642 (25 bp)
CGATACATACCAACTAGAAGCGGAG
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--906--292Chr04:3844624..3844648 (25 bp)
ATACCAACTAGAAGCGGAGAAGAAA
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--727--7272Chr04:3844685..3844709 (25 bp)
GTCCAGAAGGCAGAAATGGATGCGA
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--490--4874Chr04:3844804..3844828 (25 bp)
GCTTTGGTTGGAGGTTGAGAGGCTC
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--1089--8872Chr04:3844839..3844863 (25 bp)
TGAGGGTAATGGCACACAAGAAAGA
LOC_Os04g07260
OsAffx.13703.1.S1_x_at--85--1612Chr04:3844867..3844891 (25 bp)
AGCTGCAAATGCATTTGGTGCTGAA
LOC_Os04g07260
Target Sequence 
AACGCTGCTGATACGTACCAAGAAGTAGCAAGGAAGCAAATTAAANCAANGGTGGAGGACCTNGAGGATGCGAGGANGGC
GGTTTTGGTGGTCATGAATGCTGCCGATACATACCAACTAGAAGCGGAGAAGAAAATTAAGGATAAGNTGGAGGAATTGA
GGGTCCTTGGGGTCCAGAAGGCAGAAATGGATGCGAGGGCNGCATCTTTGGAATCNGGGCTTAAGACAGCTCTAGCNAAG
ANTCAGGAATTGGAGGCTGANTGTGATAAGGTGATGATTGAAAATAATANGCTTTGGTTGGAGGTTGAGAGGCTCATGAT
GGAANTGAGGGTAATGGCACACAAGAAAGAGGNAGCTGCAAATGCATTTGGTGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13703.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis