Browse Element(s) Details


OsAffx.13728.1.S1_at

Description tigr:9632.m00767
TID=OsAffx.13728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0851011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08480Os.26886.6.S1_s_at10/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480Os.26886.2.S1_s_at9/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480OsAffx.16467.1.S1_at3/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480OsAffx.22240.1.S1_x_at1/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08490Os.26886.1.S1_x_at5/114+4570653..4574004transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08490Os.26886.3.S1_x_at5/114+4570653..4574004transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08500OsAffx.3748.1.S1_at11/114+4578450..4579526hypothetical protein
LOC_Os04g08510OsAffx.13728.1.S1_at11/114+4585130..4586326F-box domain containing protein, expressed
LOC_Os04g08520NANA4+4595395..4598375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08530Os.40360.1.S1_x_at1/114+4606313..4608313Insect antifreeze protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13728.1.S1_at--800--4991Chr04:4585669..4585693 (25 bp)
GCATGGACGCTGATCGAGACGAACG
LOC_Os04g08510
OsAffx.13728.1.S1_at--645--1911Chr04:4585647..4585671 (25 bp)
ACGTGGAATGCTGCGTTAGCGCCAT
LOC_Os04g08510
OsAffx.13728.1.S1_at--924--9451Chr04:4585584..4585608 (25 bp)
TCGGCGAGGTCTCCATCATCAACAT
LOC_Os04g08510
OsAffx.13728.1.S1_at--308--771Chr04:4585492..4585516 (25 bp)
ATGTGCCACCGCAGCTACCTGGAGG
LOC_Os04g08510
OsAffx.13728.1.S1_at--54--10191Chr04:4585436..4585460 (25 bp)
TATACGAGCCTTCCACGGCGAGTGG
LOC_Os04g08510
OsAffx.13728.1.S1_at--566--1711Chr04:4585401..4585425 (25 bp)
ACCACGCCGTGGTCTACAAGTGCGA
LOC_Os04g08510
OsAffx.13728.1.S1_at--1113--5531Chr04:4585363..4585387 (25 bp)
GAAACGCCGGTGTGGTCCATGGTTA
LOC_Os04g08510
OsAffx.13728.1.S1_at--534--10491Chr04:4585300..4585324 (25 bp)
TTCAATTCGGGCTTTGGTGGTGCAA
LOC_Os04g08510
OsAffx.13728.1.S1_at--762--7491Chr04:4585284..4585308 (25 bp)
GTGGTGCAAGTGTCTCCAAGATCAA
LOC_Os04g08510
OsAffx.13728.1.S1_at--2--2571Chr04:4585255..4585279 (25 bp)
AACTGTATCTACTTATCTGAGCCTA
LOC_Os04g08510
OsAffx.13728.1.S1_at--320--5971Chr04:4585177..4585201 (25 bp)
GAGAAGATAGCTTGCCCAACCATGA
LOC_Os04g08510
Target Sequence 
GCATGGACGCTGATCGAGACGAACGTGGAATGCTGCGTTAGCGCCATCGTCCACTGCCATGGTAGCTTCCTCGCCATCGG
CTGCCTCGGCGAGGTCTCCATCATCAACATCGCCGGCGACAACGACGCGACGCCGTCTCCGGCGAGGCCAGTGTCGTCGC
TGCCAGAGCCTGCGCAGATGTGCCACCGCAGCTACCTGGAGGTGAACGGCGAGCTCCACCTCGTCGGCGTCGCTATACGA
GCCTTCCACGGCGAGTGGCCCTTCGGTCACCACGCCGTGGTCTACAAGTGCGACCTCGCCGCCGGCGAAACGCCGGTGTG
GTCCATGGTTACCGACGCCGGCGACATGGCAATGTTCATGTCCAAGAATTTCAATTCGGGCTTTGGTGGTGCAAGTGTCT
CCAAGATCAAGAGCAACTGTATCTACTTATCTGAGCCTACATATGGCAGTGATCATTCTCCAGAATTGGTTGATATTTCT
ACTGGCATGTCAGAGAAGATAGCTTGCCCAACCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis