Browse Element(s) Details

OsAffx.13740.1.S1_at

Description

tigr:9632.m00860
TID=OsAffx.13740.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08960	1/11	hypothetical protein
LOC_Os07g12270	1/11	hypothetical protein
LOC_Os12g26970	1/11	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19140	1/11	hypothetical protein
LOC_Os11g16800	1/11	hypothetical protein
LOC_Os08g17100	1/11	hypothetical protein
LOC_Os04g55070	1/11	oxidoreductase, 2OG-Fe oxygenase family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08910	Os.27742.2.S1_a_at	11/11	6	+	4488589..4492910	Ligand-gated ion channel family protein, expressed
LOC_Os06g08910	Os.27742.1.S1_at	11/11	6	+	4488589..4492910	Ligand-gated ion channel family protein, expressed
LOC_Os06g08910	OsAffx.4776.1.S1_s_at	2/11	6	+	4488589..4492910	Ligand-gated ion channel family protein, expressed
LOC_Os06g08920	OsAffx.27520.1.S1_at	11/11	6	+	4496906..4498414	hypothetical protein
LOC_Os06g08920	OsAffx.21973.1.S1_at	1/11	6	+	4496906..4498414	hypothetical protein
LOC_Os06g08930	OsAffx.27521.1.S1_at	11/11	6	+	4499767..4501666	Ligand-gated ion channel family protein
LOC_Os06g08940	NA	NA	6	+	4504108..4507416	retrotransposon protein, putative, unclassified
LOC_Os06g08950	NA	NA	6	+	4508033..4514188	retrotransposon protein, putative, unclassified
LOC_Os06g08960	OsAffx.15322.1.S1_x_at	11/11	6	+	4515894..4523961	hypothetical protein
LOC_Os06g08960	OsAffx.13740.1.S1_at	1/11	6	+	4515894..4523961	hypothetical protein
LOC_Os06g08970	OsAffx.27522.1.S1_x_at	7/11	6	+	4525001..4527138	retrotransposon protein, putative, unclassified
LOC_Os06g08970	OsAffx.3613.1.S1_x_at	2/11	6	+	4525001..4527138	retrotransposon protein, putative, unclassified
LOC_Os06g08970	OsAffx.3613.1.S1_at	1/11	6	+	4525001..4527138	retrotransposon protein, putative, unclassified
LOC_Os06g08980	OsAffx.15323.1.S1_at	5/11	6	+	4528985..4529416	hypothetical protein
LOC_Os06g08990	Os.55034.1.S1_at	11/11	6	+	4529989..4531664	expressed protein
LOC_Os06g09000	OsAffx.15324.1.S1_at	11/11	6	+	4533691..4534054	hypothetical protein
LOC_Os06g09010	OsAffx.15323.1.S1_at	8/11	6	+	4535225..4536805	hypothetical protein
LOC_Os06g09010	OsAffx.15726.1.S1_at	1/11	6	+	4535225..4536805	hypothetical protein
LOC_Os06g09020	Os.10201.1.S1_at	11/11	6	+	4537330..4539523	expressed protein
LOC_Os06g09030	OsAffx.27523.1.S1_x_at	1/11	6	+	4545927..4546190	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0007389	biological_process	pattern specification
GO:0008152	biological_process	metabolism
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0009813	biological_process	flavonoid biosynthesis
GO:0009825	biological_process	multidimensional cell growth
GO:0010051	biological_process	vascular tissue pattern formation (sensu Tracheophyta)
GO:0016126	biological_process	sterol biosynthesis
GO:0042023	biological_process	DNA endoreduplication
GO:0045487	biological_process	gibberellic acid catabolism
GO:0005783	cellular_component	endoplasmic reticulum
GO:0003838	molecular_function	sterol 24-C-methyltransferase activity
GO:0008757	molecular_function	S-adenosylmethionine-dependent methyltransferase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0019825	molecular_function	oxygen binding
GO:0045431	molecular_function	flavonol synthase activity
GO:0045543	molecular_function	gibberellin 2-beta-dioxygenase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.13740.1.S1_at--285--519	1	NONE	GAATAGGTACAAGCATAAGTCCCGG	NONE
OsAffx.13740.1.S1_at--46--299	1	NONE	AATAGGTACAAGCATAAGTCCCGGT	NONE
OsAffx.13740.1.S1_at--941--27	1	NONE	ATAGGTACAAGCATAAGTCCCGGTT	NONE
OsAffx.13740.1.S1_at--729--1007	1	NONE	TAGGTACAAGCATAAGTCCCGGTTG	NONE
OsAffx.13740.1.S1_at--242--101	1	NONE	AGGTACAAGCATAAGTCCCGGTTGT	NONE
OsAffx.13740.1.S1_at--862--783	1	NONE	GGTACAAGCATAAGTCCCGGTTGTT	NONE
OsAffx.13740.1.S1_at--294--703	1	NONE	GTACAAGCATAAGTCCCGGTTGTTT	NONE
OsAffx.13740.1.S1_at--938--221	1	NONE	ACAAGCATAAGTCCCGGTTGTTTAT	NONE
OsAffx.13740.1.S1_at--645--483	136	Chr12:26172792..26172811 (20 bp)	GCATAAGTCCCGGTTGTTTATACCA	NONE
OsAffx.13740.1.S1_at--513--571	7	Chr11:17190605..17190626 (22 bp)	GACTAAAGATAATTGGAGCCTGCAC	NONE
OsAffx.13740.1.S1_at--103--199	5	Chr11:17190606..17190626 (21 bp)	ACTAAAGATAATTGGAGCCTGCACT	NONE

Target Sequence

GAATAGGTACAAGCATAAGTCCCGGTTGTTTATACCAACCGGGACTAAAGATAATTGGAGCCTGCACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis