Browse Element(s) Details


OsAffx.13796.1.S1_at

Description tigr:9632.m01184
TID=OsAffx.13796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Papain family cysteine protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1309011/11Vignain precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13050OsAffx.26013.1.S1_at11/114+7174762..7180150hypothetical protein
LOC_Os04g13050Os.37083.1.S1_at1/114+7174762..7180150hypothetical protein
LOC_Os04g13060OsAffx.26014.1.S1_at11/114+7186357..7187052hypothetical protein
LOC_Os04g13070NANA4+7188918..7189205hypothetical protein
LOC_Os04g13080OsAffx.1196.1.S1_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13080OsAffx.5782.1.S1_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13080OsAffx.1196.1.S1_x_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13090OsAffx.13796.1.S1_at11/114+7201164..7202278Vignain precursor, putative
LOC_Os04g13100NANA4+7207837..7210824retrotransposon protein, putative, unclassified
LOC_Os04g13110OsAffx.20691.1.S1_x_at1/114+7211440..7217616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13110OsAffx.20387.1.S1_x_at1/114+7211440..7217616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13120NANA4+7219602..7220726hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13796.1.S1_at--1160--1551Chr04:7201663..7201687 (25 bp)
AGCTTATCTCCCTCTCTGAGCAAGA
LOC_Os04g13090
OsAffx.13796.1.S1_at--482--10791Chr04:7201636..7201660 (25 bp)
TTGTTGACTGCGATGTTCATGGCGA
LOC_Os04g13090
OsAffx.13796.1.S1_at--115--7551Chr04:7201552..7201576 (25 bp)
GTGGCCTCACCACTGAGTCTAAGTA
LOC_Os04g13090
OsAffx.13796.1.S1_at--980--9771Chr04:7201533..7201557 (25 bp)
TAAGTACCCATACACAGCGGCAGAC
LOC_Os04g13090
OsAffx.13796.1.S1_at--824--1931Chr04:7201510..7201534 (25 bp)
ACGGCAAGTGCAATGGTGGATCCAA
LOC_Os04g13090
OsAffx.13796.1.S1_at--55--711Chr04:7201441..7201465 (25 bp)
ATGAGGCCGCACTCATGAAGGCCGT
LOC_Os04g13090
OsAffx.13796.1.S1_at--641--5291Chr04:7201425..7201449 (25 bp)
GAAGGCCGTGGCAAACCAACCTGTT
LOC_Os04g13090
OsAffx.13796.1.S1_at--477--1771Chr04:7201407..7201431 (25 bp)
ACCTGTTTCTGTTGCCGTGGATGGA
LOC_Os04g13090
OsAffx.13796.1.S1_at--953--2071Chr04:7201373..7201397 (25 bp)
ACATTCCAGTTCTACTCTGGTGGCG
LOC_Os04g13090
OsAffx.13796.1.S1_at--991--3771Chr04:7201359..7201383 (25 bp)
CTCTGGTGGCGTGATGACCGGCTCA
LOC_Os04g13090
OsAffx.13796.1.S1_at--811--4691Chr04:7201333..7201357 (25 bp)
GCGGCACTGACTTAGACCATGGGAT
LOC_Os04g13090
Target Sequence 
AGCTTATCTCCCTCTCTGAGCAAGAGCTTGTTGACTGCGATGTTCATGGCGAGGATCAGGGCTGCGAGGGAGGGCTCATG
GATGATGCCTTCAAATTCATCATCAAGAATGGTGGCCTCACCACTGAGTCTAAGTACCCATACACAGCGGCAGACGGCAA
GTGCAATGGTGGATCCAACAGCGCCGCAACAATCAAGGGCTACGAGGATGTGCCAGCTAACAATGAGGCCGCACTCATGA
AGGCCGTGGCAAACCAACCTGTTTCTGTTGCCGTGGATGGAGGCGACATGACATTCCAGTTCTACTCTGGTGGCGTGATG
ACCGGCTCATGCGGCACTGACTTAGACCATGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis