Browse Element(s) Details


OsAffx.26014.1.S1_at

Description tigr:9632.m01181
TID=OsAffx.26014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1306011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13020NANA4+7160118..7163087retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13030Os.10703.2.S1_x_at1/114+7163405..7169503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13040OsAffx.3780.1.S1_at11/114+7170107..7171009F-box domain containing protein
LOC_Os04g13050OsAffx.26013.1.S1_at11/114+7174762..7180150hypothetical protein
LOC_Os04g13050Os.37083.1.S1_at1/114+7174762..7180150hypothetical protein
LOC_Os04g13060OsAffx.26014.1.S1_at11/114+7186357..7187052hypothetical protein
LOC_Os04g13070NANA4+7188918..7189205hypothetical protein
LOC_Os04g13080OsAffx.1196.1.S1_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13080OsAffx.5782.1.S1_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13080OsAffx.1196.1.S1_x_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13090OsAffx.13796.1.S1_at11/114+7201164..7202278Vignain precursor, putative
LOC_Os04g13100NANA4+7207837..7210824retrotransposon protein, putative, unclassified
LOC_Os04g13110OsAffx.20691.1.S1_x_at1/114+7211440..7217616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13110OsAffx.20387.1.S1_x_at1/114+7211440..7217616retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26014.1.S1_at--456--4251Chr04:7186405..7186429 (25 bp)
CCGGAAGCCACTGATGATCCATCTT
LOC_Os04g13060
OsAffx.26014.1.S1_at--726--571Chr04:7186421..7186445 (25 bp)
ATCCATCTTCTCTTGTGTCGAGGCA
LOC_Os04g13060
OsAffx.26014.1.S1_at--218--8271Chr04:7186442..7186466 (25 bp)
GGCATATATATGTCGGGTTGTCCTA
LOC_Os04g13060
OsAffx.26014.1.S1_at--671--3971Chr04:7186455..7186479 (25 bp)
CGGGTTGTCCTACGATGTCACGGTA
LOC_Os04g13060
OsAffx.26014.1.S1_at--873--7912Chr04:7186539..7186563 (25 bp)
GGTTGGTGGTGAAATCCTCCAGCTA
LOC_Os04g13060
OsAffx.26014.1.S1_at--710--5571Chr04:7186549..7186573 (25 bp)
GAAATCCTCCAGCTAATTTGTCCAG
LOC_Os04g13060
OsAffx.26014.1.S1_at--745--8031Chr04:7186591..7186615 (25 bp)
GGAGTTTGCAATCGTGGACCTCAAC
LOC_Os04g13060
OsAffx.26014.1.S1_at--458--9711Chr04:7186611..7186635 (25 bp)
TCAACTCGTGGCCATCGATGACGAC
LOC_Os04g13060
OsAffx.26014.1.S1_at--673--6951Chr04:7186843..7186867 (25 bp)
GTAGAGCTTGGATGCCCAGGTCGCA
LOC_Os04g13060
OsAffx.26014.1.S1_at--376--8111Chr04:7186869..7186893 (25 bp)
GGACGCTACCGGCATGCAGTCGTAT
LOC_Os04g13060
OsAffx.26014.1.S1_at--47--5031Chr04:7186884..7186908 (25 bp)
GCAGTCGTATGCCATTCGATCGAAT
LOC_Os04g13060
Target Sequence 
CCGGAAGCCACTGATGATCCATCTTCTCTTGTGTCGAGGCATATATATGTCGGGTTGTCCTACGATGTCACGGTAGTTTG
GGAGATGCAGCTGGAATCTGTCGAGGCAGTACGGGGCGTTGTGGGCGATGAGCAGGTTGGTGGTGAAATCCTCCAGCTAA
TTTGTCCAGCTCAACCAGCTCGCCGTGGAGTTTGCAATCGTGGACCTCAACTCGTGGCCATCGATGACGACGCACGGCAT
GGAGCGCCACAGGTCACGCCACCGCCGGGACAGCGCGTACGTCTGCACGGCCTGCCGCGCCGGGAGGAAGGACACATGAT
CGTGTGGACGAGGCAGTCCGGCAACGCGCTCAGGCGGTCGCCATCCTCGTCGGCCTTCGGCTGGTCGAGCTCATCGCCGG
TGTTGGTGTTGTCGTCGCAAGATCGATCGCAAAAGATGGTAGAGCTTGGATGCCCAGGTCGCAGGGACGCTACCGGCATG
CAGTCGTATGCCATTCGATCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis