Browse Element(s) Details


OsAffx.13805.1.S1_at

Description tigr:9632.m01232
TID=OsAffx.13805.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1357011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13550NANA4+7540834..7546217retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g13560OsAffx.16467.1.S1_at6/114+7557119..7560582hypothetical protein
LOC_Os04g13560Os.26886.2.S1_s_at2/114+7557119..7560582hypothetical protein
LOC_Os04g13560OsAffx.32199.1.A1_x_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13560OsAffx.23039.1.S1_x_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13560Os.26886.6.S1_s_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13570OsAffx.13805.1.S1_at11/114+7561773..7562096hypothetical protein
LOC_Os04g13580OsAffx.13806.1.S1_at11/114+7567627..7568067hypothetical protein
LOC_Os04g13590OsAffx.3783.1.S1_at11/114+7573234..7574958hypothetical protein
LOC_Os04g13590OsAffx.10309.1.S1_x_at1/114+7573234..7574958hypothetical protein
LOC_Os04g13600OsAffx.25936.1.S1_s_at9/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.7.S1_s_at7/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.2.S1_x_at5/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.5.S1_x_at2/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13610NANA4+7581201..7581815hypothetical protein
LOC_Os04g13620Os.10827.1.S1_x_at7/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13620Os.46055.2.S1_x_at5/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.47463.1.S1_x_at5/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.14491.2.S1_x_at4/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13805.1.S1_at--625--4271Chr04:7562020..7562044 (25 bp)
CCTTCAGACAAACCAACCCATATTT
LOC_Os04g13570
OsAffx.13805.1.S1_at--610--831Chr04:7561989..7562013 (25 bp)
ATGGAAATCAACTTTCAGGTCATGG
LOC_Os04g13570
OsAffx.13805.1.S1_at--741--3491Chr04:7561969..7561993 (25 bp)
CATGGCCATCTTCCCTGAAGGGATA
LOC_Os04g13570
OsAffx.13805.1.S1_at--1029--7831Chr04:7561936..7561960 (25 bp)
GGTACAAAAGGATAGCAGCTTCCAA
LOC_Os04g13570
OsAffx.13805.1.S1_at--71--5071Chr04:7561922..7561946 (25 bp)
GCAGCTTCCAAGCAACAACATTGGG
LOC_Os04g13570
OsAffx.13805.1.S1_at--655--7611Chr04:7561890..7561914 (25 bp)
GGGAATAGCTCAATGCTTATCTCTG
LOC_Os04g13570
OsAffx.13805.1.S1_at--267--3671Chr04:7561875..7561899 (25 bp)
CTTATCTCTGTCTTTGGCCAATATG
LOC_Os04g13570
OsAffx.13805.1.S1_at--992--2991Chr04:7561844..7561868 (25 bp)
AATGAACCAATGTTATCGGCAGCTA
LOC_Os04g13570
OsAffx.13805.1.S1_at--149--9451Chr04:7561829..7561853 (25 bp)
TCGGCAGCTACATACTTTTGGTCAG
LOC_Os04g13570
OsAffx.13805.1.S1_at--988--2071Chr04:7561820..7561844 (25 bp)
ACATACTTTTGGTCAGACACCCTCA
LOC_Os04g13570
OsAffx.13805.1.S1_at--939--5631Chr04:7561805..7561829 (25 bp)
GACACCCTCAATTGCTTCCTGTTTA
LOC_Os04g13570
Target Sequence 
CCTTCAGACAAACCAACCCATATTTAGTCAAATGGAAATCAACTTTCAGGTCATGGCCATCTTCCCTGAAGGGATATAGA
ACTTGGTACAAAAGGATAGCAGCTTCCAAGCAACAACATTGGGAAGAAATGGGAATAGCTCAATGCTTATCTCTGTCTTT
GGCCAATATGAAGATAAATGAACCAATGTTATCGGCAGCTACATACTTTTGGTCAGACACCCTCAATTGCTTCCTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis