Browse Element(s) Details


OsAffx.13806.1.S1_at

Description tigr:9632.m01233
TID=OsAffx.13806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1358011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13550NANA4+7540834..7546217retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g13560OsAffx.16467.1.S1_at6/114+7557119..7560582hypothetical protein
LOC_Os04g13560Os.26886.2.S1_s_at2/114+7557119..7560582hypothetical protein
LOC_Os04g13560OsAffx.32199.1.A1_x_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13560OsAffx.23039.1.S1_x_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13560Os.26886.6.S1_s_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13570OsAffx.13805.1.S1_at11/114+7561773..7562096hypothetical protein
LOC_Os04g13580OsAffx.13806.1.S1_at11/114+7567627..7568067hypothetical protein
LOC_Os04g13590OsAffx.3783.1.S1_at11/114+7573234..7574958hypothetical protein
LOC_Os04g13590OsAffx.10309.1.S1_x_at1/114+7573234..7574958hypothetical protein
LOC_Os04g13600OsAffx.25936.1.S1_s_at9/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.7.S1_s_at7/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.2.S1_x_at5/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.5.S1_x_at2/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13610NANA4+7581201..7581815hypothetical protein
LOC_Os04g13620Os.10827.1.S1_x_at7/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13620Os.46055.2.S1_x_at5/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.47463.1.S1_x_at5/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.14491.2.S1_x_at4/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13806.1.S1_at--913--6771Chr04:7567957..7567981 (25 bp)
GTTAGAGGACCGCTCGATCCGCCCG
LOC_Os04g13580
OsAffx.13806.1.S1_at--317--7631Chr04:7567891..7567915 (25 bp)
GGGAGCGCCAATGTCACGGCCGCGG
LOC_Os04g13580
OsAffx.13806.1.S1_at--917--4111Chr04:7567871..7567895 (25 bp)
CGCGGCCGCAGGAGAAGCTTGGGTG
LOC_Os04g13580
OsAffx.13806.1.S1_at--254--7871Chr04:7567829..7567853 (25 bp)
GGTTAGATGACCACCGGATGCGCCG
LOC_Os04g13580
OsAffx.13806.1.S1_at--823--7971Chr04:7567814..7567838 (25 bp)
GGATGCGCCGGCATAAACACCTTCG
LOC_Os04g13580
OsAffx.13806.1.S1_at--941--4631Chr04:7567784..7567808 (25 bp)
GCGTACACTGGATCCGCCCGCGGGA
LOC_Os04g13580
OsAffx.13806.1.S1_at--238--4531Chr04:7567769..7567793 (25 bp)
GCCCGCGGGAGCTTCGATGCCATCG
LOC_Os04g13580
OsAffx.13806.1.S1_at--1127--7631Chr04:7567763..7567787 (25 bp)
GGGAGCTTCGATGCCATCGTCTCAC
LOC_Os04g13580
OsAffx.13806.1.S1_at--644--4431Chr04:7567751..7567775 (25 bp)
GCCATCGTCTCACCACAATGGGAAA
LOC_Os04g13580
OsAffx.13806.1.S1_at--539--7151Chr04:7567745..7567769 (25 bp)
GTCTCACCACAATGGGAAAAGCTTG
LOC_Os04g13580
OsAffx.13806.1.S1_at--722--551Chr04:7567670..7567694 (25 bp)
ATCCGCAAGCAGGAGCTGCCGACAC
LOC_Os04g13580
Target Sequence 
GTTAGAGGACCGCTCGATCCGCCCGTCGGAAACACCAGCGTCGCCACCTCCGGCGGATCTGCCCGCGGGAGCGCCAATGT
CACGGCCGCGGCCGCAGGAGAAGCTTGGGTGCGGAGCGGGAGGAGGGGGGTTAGATGACCACCGGATGCGCCGGCATAAA
CACCTTCGCCGCCGCGTACACTGGATCCGCCCGCGGGAGCTTCGATGCCATCGTCTCACCACAATGGGAAAAGCTTGGGG
GCGTAAGGTCCGCCCGCTGGTTACGCCACTGCCGCCGCCTCCTCCGGATCCGCAAGCAGGAGCTGCCGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis