Browse Element(s) Details

OsAffx.13833.1.S1_x_at

Description

tigr:9634.m03098
TID=OsAffx.13833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g33060	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g33030	Os.45976.1.S1_x_at	2/11	6	+	19225412..19229085	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33040	NA	NA	6	+	19230469..19233393	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g33050	Os.10827.1.S1_x_at	9/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33050	Os.46055.2.S1_x_at	4/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33050	OsAffx.18122.1.S1_x_at	1/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33060	OsAffx.13833.1.S1_x_at	11/11	6	+	19250252..19250948	hypothetical protein
LOC_Os06g33070	OsAffx.25936.7.S1_s_at	8/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_s_at	7/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.5.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.2.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_at	1/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33080	Os.11554.1.S1_at	11/11	6	+	19257150..19258379	Peroxidase family protein, expressed
LOC_Os06g33090	Os.47413.1.S1_x_at	3/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33090	Os.11554.1.S1_at	1/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33100	Os.47413.1.S1_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33100	Os.47413.1.S1_x_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33110	OsAffx.20673.1.A1_x_at	2/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20689.1.A1_x_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20673.1.A1_at	1/11	6	+	19273319..19275261	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.13833.1.S1_x_at--243--397	1	Chr06:19250800..19250824 (25 bp)	CGGTGCTGGCCGGTTTCGTCAATTC	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--629--777	1	Chr06:19250799..19250823 (25 bp)	GGTGCTGGCCGGTTTCGTCAATTCA	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--249--731	1	Chr06:19250798..19250822 (25 bp)	GTGCTGGCCGGTTTCGTCAATTCAG	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--1030--911	1	Chr06:19250797..19250821 (25 bp)	TGCTGGCCGGTTTCGTCAATTCAGG	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--3--845	1	Chr06:19250794..19250818 (25 bp)	TGGCCGGTTTCGTCAATTCAGGCGT	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--505--447	1	Chr06:19250792..19250816 (25 bp)	GCCGGTTTCGTCAATTCAGGCGTCG	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--667--395	1	Chr06:19250790..19250814 (25 bp)	CGGTTTCGTCAATTCAGGCGTCGGG	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--719--599	1	Chr06:19250740..19250764 (25 bp)	GAGAGGGCGGCGGTGCAAAGGTCGA	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--600--467	1	Chr06:19250731..19250755 (25 bp)	GCGGTGCAAAGGTCGAGGCGGCAGT	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--217--393	1	Chr06:19250522..19250546 (25 bp)	CGGAGATGGCGGTAGAAAGGTCGGC	LOC_Os06g33060
OsAffx.13833.1.S1_x_at--491--113	1	Chr06:19250519..19250543 (25 bp)	AGATGGCGGTAGAAAGGTCGGCGGA	LOC_Os06g33060

Target Sequence

CGGTGCTGGCCGGTTTCGTCAATTCAGGCGTCGGGGAGGTCGGGGAAGTAGATGGCGGCGGAGAGGGCGGCGGTGCAAAG
GTCGAGGCGGCAGTGGTGGTGGAGATGGTGATGGAGAGGGCGGCGGTGGTCAGGGATCCCAGCGTCGTGGATCCCGGTGT
CGGGGAGGTCAGGGTCGGGGAGGTCGGGGAAGTCGATGGACGGACGGCGAGAGGACGAGCGGCGGGCGGCGGAGAGGGCG
GAGATGGCGGTAGAAAGGTCGGCGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis