Browse Element(s) Details


OsAffx.13835.1.S1_at

Description tigr:9632.m01446
TID=OsAffx.13835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1616011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16120OsAffx.10637.4.S1_s_at11/114+8730639..8733974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g16120OsAffx.10637.3.S1_s_at11/114+8730639..8733974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g16120OsAffx.10637.1.S1_s_at11/114+8730639..8733974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g16130OsAffx.26041.4.S1_s_at11/114+8737756..8740558hAT family dimerisation domain containing protein
LOC_Os04g16140NANA4+8743499..8743951hypothetical protein
LOC_Os04g16150NANA4+8748755..8754057retrotransposon protein, putative, unclassified
LOC_Os04g16160OsAffx.13835.1.S1_at11/114+8758756..8760142hypothetical protein
LOC_Os04g16170NANA4+8762507..8766627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16180NANA4+8767125..8768219retrotransposon protein, putative, unclassified
LOC_Os04g16190OsAffx.19035.2.S1_at11/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.13772.1.S1_at2/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.13772.1.S1_x_at1/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.19035.1.S1_x_at1/114+8769564..8772400hypothetical protein
LOC_Os04g16200OsAffx.22699.1.S1_x_at3/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16200Os.52731.1.S1_at1/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16200OsAffx.18275.1.S1_x_at1/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16210Os.38764.1.S1_x_at6/114+8780432..8782610hypothetical protein
LOC_Os04g16210Os.31845.1.S1_x_at4/114+8780432..8782610hypothetical protein
LOC_Os04g16210Os.31845.1.S1_at3/114+8780432..8782610hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13835.1.S1_at--685--1811Chr04:8759237..8759261 (25 bp)
ACCCTGAGACAGATGGCTGGCACCA
LOC_Os04g16160
OsAffx.13835.1.S1_at--412--771Chr04:8759193..8759217 (25 bp)
ATGTCTGTTGCAACCTTGCTCCGTT
LOC_Os04g16160
OsAffx.13835.1.S1_at--119--10411Chr04:8759114..8759138 (25 bp)
TTATGTCCTTTAGAAGTCGCCGTGC
LOC_Os04g16160
OsAffx.13835.1.S1_at--1006--4531Chr04:8759091..8759115 (25 bp)
GCCCGTGGAAGAAAGTCGCTACTAT
LOC_Os04g16160
OsAffx.13835.1.S1_at--402--9871Chr04:8759053..8759077 (25 bp)
TACTTCCAGGGATCTCTTCAACAAT
LOC_Os04g16160
OsAffx.13835.1.S1_at--934--10251Chr04:8758989..8759013 (25 bp)
TTTGAAGAAGTTGCCGACCTGCCTG
LOC_Os04g16160
OsAffx.13835.1.S1_at--602--9131Chr04:8758953..8758977 (25 bp)
TGCGGGTTCGACTGCTTGCAGAATC
LOC_Os04g16160
OsAffx.13835.1.S1_at--606--1911Chr04:8758921..8758945 (25 bp)
ACGTGTGGTTTTGCAGTTTCAGATG
LOC_Os04g16160
OsAffx.13835.1.S1_at--909--6711Chr04:8758861..8758885 (25 bp)
GTTCTTCGCCGAAACTTGCAAGGTT
LOC_Os04g16160
OsAffx.13835.1.S1_at--583--3191Chr04:8758843..8758867 (25 bp)
CAAGGTTCTGGATGTTCTGCAAGTT
LOC_Os04g16160
OsAffx.13835.1.S1_at--675--3851Chr04:8758827..8758851 (25 bp)
CTGCAAGTTGATGATGGTGTCCACA
LOC_Os04g16160
Target Sequence 
ACCCTGAGACAGATGGCTGGCACCACAGCAAGAAAGGTTCAGCCATGTCTGTTGCAACCTTGCTCCGTTGCTTCCCTGTA
ATCCATGAACTGAAACTCGCATTGGAGAGTACGAGTAGCAAGTTTATGTCCTTTAGAAGTCGCCGTGCCCGTGGAAGAAA
GTCGCTACTATTTACGGAATTTAATACTTCCAGGGATCTCTTCAACAATAGAAGAACTATGCTTGACGACGATGATGAAT
CGTCTGAATTTGAAGAAGTTGCCGACCTGCCTGGTTTGACTGGCTGCGGGTTCGACTGCTTGCAGAATCATCTGAAACGT
GTGGTTTTGCAGTTTCAGATGGAGGATGTGAATTGCTTTGGGGTTCGCCTCGCCAAGTTCTTCGCCGAAACTTGCAAGGT
TCTGGATGTTCTGCAAGTTGATGATGGTGTCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis