Browse Element(s) Details


OsAffx.13838.1.S1_at

Description tigr:9632.m01461
TID=OsAffx.13838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1631411/11hypothetical protein
LOC_Os12g189701/11Transposable element protein, putative, Retrotrans_gag
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16270OsAffx.31811.3.S1_x_at5/114+8820757..8822355Zinc knuckle family protein
LOC_Os04g16280OsAffx.15726.1.S1_at1/114+8825730..8827797transposon protein, putative, unclassified
LOC_Os04g16280OsAffx.29731.3.S1_at1/114+8825730..8827797transposon protein, putative, unclassified
LOC_Os04g16290NANA4+8830834..8831571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16300OsAffx.29731.1.S1_at2/114+8832745..8835260retrotransposon protein, putative, unclassified
LOC_Os04g16314OsAffx.26043.1.S1_at11/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.26043.1.S1_x_at11/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.13838.1.S1_at11/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.5893.1.S1_at1/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.17095.2.S1_x_at1/114+8841809..8844743hypothetical protein
LOC_Os04g16314OsAffx.16347.1.S1_at1/114+8841809..8844743hypothetical protein
LOC_Os04g16330NANA4+8847214..8848073retrotransposon protein, putative, unclassified
LOC_Os04g16340NANA4+8857892..8859954retrotransposon protein, putative, unclassified
LOC_Os04g16350NANA4+8865704..8868808retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13838.1.S1_at--82--9991Chr04:8842010..8842034 (25 bp)
TACCATCAGAAGAGTCAGACCCCAA
LOC_Os04g16314
OsAffx.13838.1.S1_at--782--391Chr04:8842014..8842038 (25 bp)
ATCAGAAGAGTCAGACCCCAACTGT
LOC_Os04g16314
OsAffx.13838.1.S1_at--422--7351Chr04:8842095..8842119 (25 bp)
GTGAATACCCGGAAATATTGCTCAA
LOC_Os04g16314
OsAffx.13838.1.S1_at--161--10231Chr04:8842110..8842134 (25 bp)
TATTGCTCAACGGCTTTCCTCTCAA
LOC_Os04g16314
OsAffx.13838.1.S1_at--79--3331Chr04:8842598..8842622 (25 bp)
CACTCTGGATGGATTGTCCGAAAAC
LOC_Os04g16314
OsAffx.13838.1.S1_at--588--5971Chr04:8842627..8842651 (25 bp)
GAGAACATCATGCTCGTTAACACCA
LOC_Os04g16314
OsAffx.13838.1.S1_at--659--4771Chr04:8842638..8842662 (25 bp)
GCTCGTTAACACCAACAACGGGTAT
LOC_Os04g16314
OsAffx.13838.1.S1_at--519--6452Chr04:8842706..8842730 (25 bp)
GATCAAGAACGGACCAAACCAAAGG
LOC_Os04g16314
OsAffx.13838.1.S1_at--85--1673Chr04:8842760..8842784 (25 bp)
AGCCTCAACACTTTCATGATGAACT
LOC_Os04g16314
OsAffx.13838.1.S1_at--918--5873Chr04:8842790..8842814 (25 bp)
GAGCAGGAAGAAACGAGGAACCGTA
LOC_Os04g16314
OsAffx.13838.1.S1_at--771--1551Chr04:8842811..8842835 (25 bp)
CGTAAGTACCTTAAGTTGGCATCCA
LOC_Os04g16314
Target Sequence 
TACCATCAGAAGAGTCAGACCCCAACTGTTGCCGTTCTCCCTCCTCGGGAGAGCGGAACAGTGGTTCTACATCAACCGTG
CAACAGTGAATACCCGGAAATATTGCTCAACGGCTTTCCTCTCAAAATTCTTCTCGATAGGCAAGACCAATGCTCTTCGT
GGAAGAATATCCAGCTTTCAGCAGACGAGGGATGAAACCATTCCTAAAGCTTGGGAAAGGCTGCAGGAACTGGACAACAA
TGAGAAGGATGCCAAGCAGGGTACCGTTAAGGCCCTGGACTCTCACACGACATGTGAGGTCTATTGCAATACTGGTCACT
CTGGATGGATTGTCCGAAAACCCGTGAGAACATCATGCTCGTTAACACCAACAACGGGTATCGTCCACAAGGAGACCAAG
GATGGAGCATTGCTCCATGGGGTAGATCAAGAACGGACCAAACCAAAGGAGGTCAAAGTAAAATCCCGAAGGACGGATAG
CCTCAACACTTTCATGATGAACTTCCTGGAGCAGGAAGAAACGAGGAACCGTAAGTACCTTAAGTTGGCATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis