Browse Element(s) Details


OsAffx.13878.1.S1_at

Description tigr:9632.m01785
TID=OsAffx.13878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1963011/11hypothetical protein
LOC_Os06g148302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g19590Os.45173.1.S1_x_at3/114+10880668..10891179retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19590Os.46297.1.S1_at1/114+10880668..10891179retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19600NANA4+10895104..10896177retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19610Os.53142.1.S1_at3/114+10896493..10901060retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19620OsAffx.30891.1.S1_x_at3/114+10903219..10910511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19620Os.27980.1.S1_at1/114+10903219..10910511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19630OsAffx.13878.1.S1_at11/114+10914605..10915524hypothetical protein
LOC_Os04g19630Os.7975.1.S1_x_at1/114+10914605..10915524hypothetical protein
LOC_Os04g19640OsAffx.26070.3.S1_x_at11/114+10920531..10922960hypothetical protein
LOC_Os04g19640OsAffx.26070.2.S1_x_at8/114+10920531..10922960hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13878.1.S1_at--1070--7971Chr04:10915266..10915290 (25 bp)
GGATGTAGGCTCTAATGGTTGTTTC
LOC_Os04g19630
OsAffx.13878.1.S1_at--265--3771Chr04:10915275..10915299 (25 bp)
CTCTAATGGTTGTTTCTTGCAGCAG
LOC_Os04g19630
OsAffx.13878.1.S1_at--816--6834Chr06:8430505..8430664 (25 bp)
GTTTCTTGCAGCAGAGGAGTGCCTC
LOC_Os06g14830
OsAffx.13878.1.S1_at--1066--9573Chr06:8430647..8430667 (21 bp)
TCTTGCAGCAGAGGAGTGCCTCTTC
LOC_Os06g14830
OsAffx.13878.1.S1_at--203--3471Chr04:10915330..10915354 (25 bp)
CAGTGTGCCCCTTCTATGAATGAGA
LOC_Os04g19630
OsAffx.13878.1.S1_at--220--7471Chr04:10915332..10915356 (25 bp)
GTGTGCCCCTTCTATGAATGAGATG
LOC_Os04g19630
OsAffx.13878.1.S1_at--678--9171Chr04:10915335..10915359 (25 bp)
TGCCCCTTCTATGAATGAGATGATA
LOC_Os04g19630
OsAffx.13878.1.S1_at--587--71Chr04:10915400..10915424 (25 bp)
ATTGCTATATGAGATCTATCAGTTT
LOC_Os04g19630
OsAffx.13878.1.S1_at--506--671Chr04:10915408..10915432 (25 bp)
ATGAGATCTATCAGTTTGAAGTTTT
LOC_Os04g19630
OsAffx.13878.1.S1_at--643--10733Chr06:8431596..8431617 (22 bp)
TTGAAGTTTTTTGATGGTGATGAAT
NONE
OsAffx.13878.1.S1_at--772--811Chr04:10915436..10915460 (25 bp)
ATGGTGATGAATGTGACTGTGATGA
LOC_Os04g19630
Target Sequence 
GGATGTAGGCTCTAATGGTTGTTTCTTGCAGCAGAGGAGTGCCTCTTCGAGATCCTCCGTCGGCCAGTGTGCCCCTTCTA
TGAATGAGATGATATTGTTGTATGATAAGTTCTTGCCATCCCCTTTTGTGAATGATTGCTATATGAGATCTATCAGTTTG
AAGTTTTTTGATGGTGATGAATGTGACTGTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis