Browse Element(s) Details


OsAffx.13882.1.S1_at

Description tigr:9632.m01839
TID=OsAffx.13882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g201509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20100Os.47463.1.S1_x_at6/114+11170682..11174381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20100Os.14491.2.S1_x_at4/114+11170682..11174381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20110NANA4+11183179..11183421retrotransposon protein, putative, unclassified
LOC_Os04g20120OsAffx.8864.1.S1_at8/114+11183974..11188313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20130OsAffx.13881.1.S1_at11/114+11190595..11191308hypothetical protein
LOC_Os04g20140NANA4+11194506..11197195retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g20150OsAffx.13882.1.S1_at9/114+11198453..11200211hypothetical protein
LOC_Os04g20150Os.54523.1.S1_at2/114+11198453..11200211hypothetical protein
LOC_Os04g20150OsAffx.22629.1.S1_at1/114+11198453..11200211hypothetical protein
LOC_Os04g20164Os.11835.4.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20164Os.11835.3.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13882.1.S1_at--572--8151Chr04:11198515..11198539 (25 bp)
GGAAAGGACAAAGCCAGGAGACAAA
LOC_Os04g20150
OsAffx.13882.1.S1_at--877--2151NONE
ACACTCCGCGACGAATCAGATGACG
NONE
OsAffx.13882.1.S1_at--529--9291NONE
TCCGCGACGAATCAGATGACGGGAA
NONE
OsAffx.13882.1.S1_at--152--3531Chr04:11199550..11199574 (25 bp)
CATCCACCCCAAAAGGTGAGCTTTT
LOC_Os04g20150
OsAffx.13882.1.S1_at--975--2311Chr04:11199561..11199585 (25 bp)
AAAGGTGAGCTTTTCCGCATTCAGG
LOC_Os04g20150
OsAffx.13882.1.S1_at--135--5912Chr04:11199567..11199591 (25 bp)
GAGCTTTTCCGCATTCAGGGAGTGC
LOC_Os04g20150
OsAffx.13882.1.S1_at--91--7631Chr04:11199584..11199608 (25 bp)
GGGAGTGCGAACTCCACCCCAAAAG
LOC_Os04g20150
OsAffx.13882.1.S1_at--53--7051Chr04:11199588..11199609 (22 bp)
GTGCGAACTCCACCCCAAAAGGGAG
LOC_Os04g20150
OsAffx.13882.1.S1_at--991--9211Chr04:11199552..11199596 (25 bp)
TCCACCCCAAAAGGGAGTGCGAACT
LOC_Os04g20150
OsAffx.13882.1.S1_at--1075--9511Chr04:11199664..11199688 (25 bp)
TCTACTCCGGCCTTTAATGGCATCG
LOC_Os04g20150
OsAffx.13882.1.S1_at--695--8431Chr04:11199776..11199798 (23 bp)
GGCCAATTCCAAGAAGACAAGGTTT
LOC_Os04g20150
Target Sequence 
GGAAAGGACAAAGCCAGGAGACAAAGTGCTGATGTTCAACTCCAGGGTTAAGCTTTTCGGCCACGGAAAACTGCGCAGCA
AATGGGAAGGACTGTTCGACGTCATCGACACCTCTTCGCACGGGGCAATCACACTCCGCGACGAATCAGATGACGGGAAG
GCCGCACCGCCTCCCGCCGAGCGCTATGTGGGCACCCTCTTCACCAAGGTAGGGGATGAGGTGCTCCACAAGTATACCAC
GCCCACCGATACTCCATCCACCCCAAAAGGTGAGCTTTTCCGCATTCAGGGAGTGCGAACTCCACCCCAAAAGGGAGTGC
GAACTCCCGGTGGTGGGTATGGTAAGGGTCTACTCCGGCCTTTAATGGCATCGGAGAAGGAGGGGGCAGCGGAATCCCGT
AGCCCTCCACCTATGAAGGTGAAGCGTCATTTGATGCCCCGTCCAATTGTGAGGGCTCCCGGCCAATTCCAAGAAGACAA
GGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis