Browse Element(s) Details


OsAffx.13890.1.S1_at

Description tigr:9632.m01880
TID=OsAffx.13890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2055011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20474Os.7431.1.S1_a_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20474Os.7431.4.S1_x_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20490OsAffx.13888.1.S1_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20490OsAffx.13888.1.S1_x_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20500OsAffx.26080.1.S1_at11/114+11434682..11435365hypothetical protein
LOC_Os04g20510Os.51426.1.S1_at3/114+11437361..11439296retrotransposon protein, putative, unclassified
LOC_Os04g20520OsAffx.23010.1.S1_at11/114+11439692..11440112hypothetical protein
LOC_Os04g20540OsAffx.13889.1.S1_at11/114+11447363..11448839hydroquinone glucosyltransferase, putative, expressed
LOC_Os04g20550OsAffx.13890.1.S1_at11/114+11449221..11449773hypothetical protein
LOC_Os04g20560OsAffx.13891.1.S1_s_at10/114+11453212..11458989Methyl-CpG binding domain containing protein, expressed
LOC_Os04g20570OsAffx.2606.1.S1_at2/114+11468311..11470385hypothetical protein
LOC_Os04g20570OsAffx.1436.1.S1_x_at1/114+11468311..11470385hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13890.1.S1_at--192--1371Chr04:11449690..11449714 (25 bp)
AGACCTACAACCACTATTCGACAAA
LOC_Os04g20550
OsAffx.13890.1.S1_at--122--5251Chr04:11449500..11449524 (25 bp)
GAATCACCGGCAGGAAATGCAAGAT
LOC_Os04g20550
OsAffx.13890.1.S1_at--234--5491Chr04:11449464..11449488 (25 bp)
GAACTTGCTCGCCAACTTCAAATGG
LOC_Os04g20550
OsAffx.13890.1.S1_at--820--6151Chr04:11449440..11449464 (25 bp)
GAGGTTTAGGGTTCCTGCAACTGGA
LOC_Os04g20550
OsAffx.13890.1.S1_at--530--6011Chr04:11449417..11449441 (25 bp)
GAGAGATTCACAAGAGCCCTACGTT
LOC_Os04g20550
OsAffx.13890.1.S1_at--132--4311Chr04:11449400..11449424 (25 bp)
CCTACGTTTCATATGGCTTCGGCAA
LOC_Os04g20550
OsAffx.13890.1.S1_at--981--4651Chr04:11449355..11449379 (25 bp)
GCGTGGATCGGTTTGGAAACCCTAT
LOC_Os04g20550
OsAffx.13890.1.S1_at--898--1251Chr04:11449320..11449344 (25 bp)
AGATAAACTCCTGTTCATGGCTGCC
LOC_Os04g20550
OsAffx.13890.1.S1_at--779--3491Chr04:11449305..11449329 (25 bp)
CATGGCTGCCATGCGAGTTAAGATT
LOC_Os04g20550
OsAffx.13890.1.S1_at--235--7611Chr04:11449279..11449303 (25 bp)
GGGATAGTGCTACAACCAAAGGAGT
LOC_Os04g20550
OsAffx.13890.1.S1_at--485--5431Chr04:11449252..11449276 (25 bp)
GAACCAAAGTTCTATGCAATATCCA
LOC_Os04g20550
Target Sequence 
AGACCTACAACCACTATTCGACAAATCGGGGAAGGGGGGATGGAATCACCGGCAGGAAATGCAAGATGAACTGAGCAAGA
ACTTGCTCGCCAACTTCAAATGGAGGTTTAGGGTTCCTGCAACTGGAGAGATTCACAAGAGCCCTACGTTTCATATGGCT
TCGGCAAGAATGGAAATCAGCGGGAAAGCGTGGATCGGTTTGGAAACCCTATGCGATGAAATAGATAAACTCCTGTTCAT
GGCTGCCATGCGAGTTAAGATTGGGGATAGTGCTACAACCAAAGGAGTTGGAACCAAAGTTCTATGCAATATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis