Browse Element(s) Details


OsAffx.13909.1.S1_at

Description tigr:9632.m01998
TID=OsAffx.13909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2172011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21680NANA4+12237661..12240933transposon protein, putative, unclassified
LOC_Os04g21690NANA4+12241721..12247641retrotransposon protein, putative, unclassified
LOC_Os04g21700NANA4+12248783..12250390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21710Os.4923.1.S1_at11/114+12254502..12256920expressed protein
LOC_Os04g21720OsAffx.13909.1.S1_at11/114+12265464..12265940hypothetical protein
LOC_Os04g21730OsAffx.13910.1.S1_at10/114+12272443..12273748XH domain containing protein
LOC_Os04g21740OsAffx.15781.4.S1_x_at11/114+12275518..12278170hypothetical protein
LOC_Os04g21740OsAffx.15781.5.S1_x_at7/114+12275518..12278170hypothetical protein
LOC_Os04g21750OsAffx.30435.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.20553.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.22699.1.S1_x_at2/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.16111.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.19776.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.8201.1.S1_x_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.199.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21760OsAffx.3761.1.S1_x_at1/114+12287949..12290687hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13909.1.S1_at--389--2791Chr04:12265510..12265534 (25 bp)
AAGAGGACCGGCCACAGCTGAGCGC
LOC_Os04g21720
OsAffx.13909.1.S1_at--963--3431Chr04:12265540..12265564 (25 bp)
CAGTGGAGGCGCTACCGGAGTTCCT
LOC_Os04g21720
OsAffx.13909.1.S1_at--1080--871Chr04:12265546..12265570 (25 bp)
AGGCGCTACCGGAGTTCCTGCTGGA
LOC_Os04g21720
OsAffx.13909.1.S1_at--360--1231Chr04:12265642..12265666 (25 bp)
AGTTCTGGTACGATGAGCACACGGA
LOC_Os04g21720
OsAffx.13909.1.S1_at--67--9471Chr04:12265645..12265669 (25 bp)
TCTGGTACGATGAGCACACGGAGCG
LOC_Os04g21720
OsAffx.13909.1.S1_at--1133--3971Chr04:12265738..12265762 (25 bp)
CGGTGGCCTGCGTGGCATGCCCAAC
LOC_Os04g21720
OsAffx.13909.1.S1_at--373--551Chr04:12265774..12265798 (25 bp)
ACCTCAAGACGAGCAACCCGAAAGG
LOC_Os04g21720
OsAffx.13909.1.S1_at--798--3211Chr04:12265778..12265802 (25 bp)
CAAGACGAGCAACCCGAAAGGCGTT
LOC_Os04g21720
OsAffx.13909.1.S1_at--521--4031Chr04:12265799..12265823 (25 bp)
CGTTGGTGACAACGGCGGAGTTCGG
LOC_Os04g21720
OsAffx.13909.1.S1_at--886--7711Chr04:12265844..12265868 (25 bp)
GGTGGAAGAGGCAACCGGCCGAGGT
LOC_Os04g21720
OsAffx.13909.1.S1_at--1088--6131Chr04:12265870..12265894 (25 bp)
GAGGGTCGAAGACGGCCTCCAGATC
LOC_Os04g21720
Target Sequence 
AAGAGGACCGGCCACAGCTGAGCGCGGCGGCAGTGGAGGCGCTACCGGAGTTCCTGCTGGAGCAACGGCGGGACGGAGGG
GAGGAAGGCAGCGACGGGGTGGAGCCGGTGGCGGAGGACTGGCGGTTGAGCCAGTTCTGGTACGATGAGCACACGGAGCG
GGAGCTCGCCGGGAAGGTCGTCCGCCCCGTCTCCCTCTCCGGCCCAGCCTCCTCCGCCACCGCTGCTGCGGTGGCCTGCG
TGGCATGCCCAACGCTCTACGCCTACCTCAAGACGAGCAACCCGAAAGGCGTTGGTGACAACGGCGGAGTTCGGGGCACC
GTCAGGAGCGGCGCGGTGGAAGAGGCAACCGGCCGAGGTGGAGGGTCGAAGACGGCCTCCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis