Browse Element(s) Details


OsAffx.14049.1.S1_at

Description tigr:9632.m02893
TID=OsAffx.14049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3051011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30480NANA4+18017687..18017935hypothetical protein
LOC_Os04g30490OsAffx.26254.1.S1_at10/114+18025675..18029365MATE efflux family protein, expressed
LOC_Os04g30500OsAffx.26255.1.S1_at11/114+18031526..18032053hypothetical protein
LOC_Os04g30510OsAffx.14049.1.S1_at11/114+18042450..18043328hypothetical protein
LOC_Os04g30520OsAffx.3953.1.S1_at11/114+18050214..18050642hypothetical protein
LOC_Os04g30530NANA4+18060058..18063002NB-ARC domain containing protein, expressed
LOC_Os04g30540OsAffx.14050.1.S1_at11/114+18063778..18064869Leucine Rich Repeat family protein
LOC_Os04g30550OsAffx.3955.1.S1_at11/114+18067132..18067888GDP-mannose 4,6 dehydratase 1, putative
LOC_Os04g30560OsAffx.26256.1.S1_at11/114+18068110..18068565hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14049.1.S1_at--933--2471Chr04:18042540..18042564 (25 bp)
AACACGCTTGTTTGTGTGACACCCG
LOC_Os04g30510
OsAffx.14049.1.S1_at--887--10711Chr04:18042699..18042723 (25 bp)
TTGCTAAGCCACATGTTCAAGCCTC
LOC_Os04g30510
OsAffx.14049.1.S1_at--840--1991Chr04:18042731..18042755 (25 bp)
ACTCGACACTGCCAGGATCTGGGCG
LOC_Os04g30510
OsAffx.14049.1.S1_at--498--2431Chr04:18042757..18042781 (25 bp)
AAAAGGACTTCGCTGTACTCATCGC
LOC_Os04g30510
OsAffx.14049.1.S1_at--450--8751Chr04:18042784..18042808 (25 bp)
TGTACTACTCCATCGGATGTCCTCA
LOC_Os04g30510
OsAffx.14049.1.S1_at--947--7991Chr04:18042798..18042822 (25 bp)
GGATGTCCTCAACGTCATCATAGAG
LOC_Os04g30510
OsAffx.14049.1.S1_at--1144--411Chr04:18042814..18043015 (25 bp)
ATCATAGAGCCCATGATCTCCAACC
LOC_Os04g30510
OsAffx.14049.1.S1_at--522--351Chr04:18043071..18043095 (25 bp)
ATAACTTCTGCATCTGCAAGTCGCC
LOC_Os04g30510
OsAffx.14049.1.S1_at--874--4791Chr04:18043118..18043142 (25 bp)
GCTCGACGCTTCTTCTAGCGGAAAT
LOC_Os04g30510
OsAffx.14049.1.S1_at--459--9991Chr04:18043133..18043157 (25 bp)
TAGCGGAAATGCACTGTCCCACCAA
LOC_Os04g30510
OsAffx.14049.1.S1_at--506--8511Chr04:18043250..18043274 (25 bp)
TGGCAACACTAGGAATAGCCGTGAT
LOC_Os04g30510
Target Sequence 
AACACGCTTGTTTGTGTGACACCCGCGCTCCCTACCCTGATGTCTGGCGCTCTCAGCATCCCAAATGTCAAGATGGACAT
GTCCATCGTCCTCGACATAAAATTTTTGAACTACACCAACAAGTTTGGCTTGCTAAGCCACATGTTCAAGCCTCCTCCTC
CACTCGACACTGCCAGGATCTGGGCGCAAAAGGACTTCGCTGTACTCATCGCCCTGTACTACTCCATCGGATGTCCTCAA
CGTCATCATAGAGCCCATGATCTCCAACCACACCCTTGTCCTCAACTTCATCCACGGCCTCAGCCCTCACTTCACCACCC
AGGCATAACTTCTGCATCTGCAAGTCGCCTTTCCCACCTTCACAAGTGTCCGCTCGACGCTTCTTCTAGCGGAAATGCAC
TGTCCCACCAACTCTTCGCTGCCACCTCGACCAGCCAATCAAACTCCACCAACAAAGGGAAAAATGGCAAGGGAAAGGGC
AAAGGGAGGAGTAGCGGTGGCAATGGCAACACTAGGAATAGCCGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis