Browse Element(s) Details


OsAffx.14063.1.S1_at

Description tigr:9632.m02961
TID=OsAffx.14063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3115011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein
LOC_Os04g31160OsAffx.14064.1.S1_at10/114+18441403..18445020hypothetical protein
LOC_Os04g31170OsAffx.26266.1.S1_at11/114+18450202..18455962expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14063.1.S1_at--479--9971Chr04:18432548..18432572 (25 bp)
TACCAGGGTACCAGCCCAGAAGACA
LOC_Os04g31150
OsAffx.14063.1.S1_at--8--7691Chr04:18432553..18432577 (25 bp)
GGGTACCAGCCCAGAAGACAGAGAA
LOC_Os04g31150
OsAffx.14063.1.S1_at--1136--9971Chr04:18432556..18432580 (25 bp)
TACCAGCCCAGAAGACAGAGAAAAT
LOC_Os04g31150
OsAffx.14063.1.S1_at--493--7391Chr04:18432612..18432636 (25 bp)
GTGATAAATTTGCATTTTTGACCAG
LOC_Os04g31150
OsAffx.14063.1.S1_at--406--2251Chr04:18432617..18432641 (25 bp)
AAATTTGCATTTTTGACCAGTAGAA
LOC_Os04g31150
OsAffx.14063.1.S1_at--473--2751Chr04:18432650..18432888 (25 bp)
AAGAACAAGCTTATACTGGACACTA
LOC_Os04g31150
OsAffx.14063.1.S1_at--79--3231Chr04:18432655..18432893 (25 bp)
CAAGCTTATACTGGACACTAGGCAA
LOC_Os04g31150
OsAffx.14063.1.S1_at--521--311Chr04:18432876..18432900 (25 bp)
ATACTGGACACTAGGCAAATTGCAT
LOC_Os04g31150
OsAffx.14063.1.S1_at--998--8231Chr04:18432889..18432913 (25 bp)
GGCAAATTGCATGTGTCCTCAACGC
LOC_Os04g31150
OsAffx.14063.1.S1_at--118--2251Chr04:18432892..18432916 (25 bp)
AAATTGCATGTGTCCTCAACGCTGC
LOC_Os04g31150
OsAffx.14063.1.S1_at--461--9051Chr04:18432896..18432920 (25 bp)
TGCATGTGTCCTCAACGCTGCCCAT
LOC_Os04g31150
Target Sequence 
TACCAGGGTACCAGCCCAGAAGACAGAGAAAATGATGCCCAATATCATGTTGTGGCAAATGATGGTGATAAATTTGCATT
TTTGACCAGTAGAAATGCTCCTAAGAACAAGCTTATACTGGACACTAGGCAAATTGCATGTGTCCTCAACGCTGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis