Browse Element(s) Details


OsAffx.14067.1.S1_at

Description tigr:9632.m02974
TID=OsAffx.14067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3127011/11ribosome-associated GTPase YjeQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31210Os.5633.1.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_x_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31220OsAffx.19542.3.S1_x_at10/114+18495808..18500030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31230OsAffx.26267.1.S1_at11/114+18502172..18503090hypothetical protein
LOC_Os04g31240Os.10063.2.S1_at10/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31240Os.27780.2.S1_a_at1/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31250Os.57209.1.S1_at11/114+18508482..18509053Gamma-thionins family protein, expressed
LOC_Os04g31260NANA4+18512349..18513349hypothetical protein
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31300OsAffx.21756.2.S1_x_at3/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31300OsAffx.21756.3.S1_x_at2/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14067.1.S1_at--1150--5291Chr04:18518947..18518971 (25 bp)
GAAGGGTCTTGCAGAAACATTTCCA
LOC_Os04g31270
OsAffx.14067.1.S1_at--2--9231Chr04:18519135..18519154 (20 bp)
TCCAGAGATAAGAAAGATGCTTGCA
LOC_Os04g31270
OsAffx.14067.1.S1_at--821--6331Chr04:18519145..18519169 (25 bp)
GATGCTTGCAGAGAATGAGCCCTCA
LOC_Os04g31270
OsAffx.14067.1.S1_at--957--5271Chr04:18519157..18519181 (25 bp)
GAATGAGCCCTCAAAATGTTTATTT
LOC_Os04g31270
OsAffx.14067.1.S1_at--819--6811Chr04:18519174..18519198 (25 bp)
GTTTATTTAATGACTGTGTTCACCT
LOC_Os04g31270
OsAffx.14067.1.S1_at--248--3011Chr04:18519182..18519206 (25 bp)
AATGACTGTGTTCACCTTGGTGAGC
LOC_Os04g31270
OsAffx.14067.1.S1_at--769--9671Chr04:18519193..18519217 (25 bp)
TCACCTTGGTGAGCGTGGATGTGTT
LOC_Os04g31270
OsAffx.14067.1.S1_at--299--7771Chr04:18519224..18519248 (25 bp)
GGTGACTGGGAAAGGTATCCATACT
LOC_Os04g31270
OsAffx.14067.1.S1_at--1045--7851Chr04:18519237..18519261 (25 bp)
GGTATCCATACTATCTACAGTTGCT
LOC_Os04g31270
OsAffx.14067.1.S1_at--806--9231Chr04:18519241..18519265 (25 bp)
TCCATACTATCTACAGTTGCTTGAT
LOC_Os04g31270
OsAffx.14067.1.S1_at--752--5531Chr04:18519985..18520009 (25 bp)
GAAAGAAGATTAACCAGTCAATTCT
LOC_Os04g31270
Target Sequence 
GAAGGGTCTTGCAGAAACATTTCCAGAGATAAGAAAGATGCTTGCAGAGAATGAGCCCTCAAAATGTTTATTTAATGACT
GTGTTCACCTTGGTGAGCGTGGATGTGTTGTGAAAGGTGACTGGGAAAGGTATCCATACTATCTACAGTTGCTTGATGAA
ATCAAAATCAGAGAATCATTCCAGTTAAGAACATTTGGAACAAAAAGAGAGGGTGATGTCAGATACAAAACAGGTGTCAT
GGGTGTAAAGCAAGCAGAGCCTCGTCTTCAACTCAAAAAGCACAGAAGGGTATCAAGAAAGAAGATTAACCAGTCAATTC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis