Browse Element(s) Details


OsAffx.14163.1.S1_at

Description tigr:9632.m03435
TID=OsAffx.14163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3566011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein
LOC_Os04g35630OsAffx.14162.1.S1_at11/114+21527440..21528600hypothetical protein
LOC_Os04g35640Os.2741.4.S1_x_at1/114+21529430..21531771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35660OsAffx.14163.1.S1_at11/114+21546243..21547257No apical meristem protein, expressed
LOC_Os04g35670NANA4+21551318..21552325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35680Os.50533.1.S1_at11/114+21558280..21560175U-box domain containing protein, expressed
LOC_Os04g35690Os.57071.1.S1_at11/114+21563535..21564977TPR Domain containing protein, expressed
LOC_Os04g35700Os.27038.1.S1_at11/114+21565180..21571197mitogen-activated kinase kinase kinase alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14163.1.S1_at--210--811Chr04:21546574..21546596 (23 bp)
ATGGTAAAGCACTCCAATCCGGTAA
LOC_Os04g35660
OsAffx.14163.1.S1_at--128--811Chr04:21546600..21546624 (25 bp)
ATGGTACTTCTTCAGTCATGCGACG
LOC_Os04g35660
OsAffx.14163.1.S1_at--1066--1391Chr04:21546626..21546650 (25 bp)
AGACTAGGACCTCGCCAAATGGGCA
LOC_Os04g35660
OsAffx.14163.1.S1_at--884--7571Chr04:21546646..21546670 (25 bp)
GGGCACTGGAAACCCATTGCTGATG
LOC_Os04g35660
OsAffx.14163.1.S1_at--480--9751Chr04:21546693..21546717 (25 bp)
TAATGTTGGCCTGAAGAAGACCCTC
LOC_Os04g35660
OsAffx.14163.1.S1_at--421--5371Chr04:21546708..21546732 (25 bp)
GAAGACCCTCATTTTCTTCATTGGG
LOC_Os04g35660
OsAffx.14163.1.S1_at--88--5031Chr04:21546824..21546848 (25 bp)
GCAGTTCAAGCAAGCGGTCCCACAA
LOC_Os04g35660
OsAffx.14163.1.S1_at--400--7831Chr04:21546856..21546988 (25 bp)
GGTCACTCAGACACAGAATCCAAGA
LOC_Os04g35660
OsAffx.14163.1.S1_at--344--8031Chr04:21547047..21547071 (25 bp)
GGAGGGCACGGAACTGTCATGCTTA
LOC_Os04g35660
OsAffx.14163.1.S1_at--138--8891Chr04:21547074..21547098 (25 bp)
TGAGGTGTTTCTATCCCTAGACGAC
LOC_Os04g35660
OsAffx.14163.1.S1_at--691--6911Chr04:21547150..21547174 (25 bp)
GTAGGTTAGGTCCTTCACCTATCAA
LOC_Os04g35660
Target Sequence 
ATGGTAAAGCACTCCAATCCGGTAACCAATGGTACTTCTTCAGTCATGCGACGCAGACTAGGACCTCGCCAAATGGGCAC
TGGAAACCCATTGCTGATGAGACAGTTATTAGTGGTGGTTGTAATGTTGGCCTGAAGAAGACCCTCATTTTCTTCATTGG
GGAGCCCTTTGAGGCGATCAAAACTAACTGGGTCATGCATGAGTACCACCTAATGGATGGGAGTACCAATTGCAGCAGTA
GCAGTACTTCAAGCAGTTCAAGCAAGCGGTCCCACAAGAAAAAAGGTCACTCAGACACAGAATCCAAGAACTGGGTGATA
TGCCGAGTGTTCGAATCGAGTTATGATTCACAAGTGAGCTTCCATGAGGAGGGCACGGAACTGTCATGCTTAGATGAGGT
GTTTCTATCCCTAGACGACTATGATGAAGTCAGTTTTGCCAAATAATTAGAACCTTTATAGGAGCTGTTAGTAGGTTAGG
TCCTTCACCTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis