Browse Element(s) Details


OsAffx.14171.1.S1_at

Description tigr:9632.m03483
TID=OsAffx.14171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3661011/11Endoglucanase 1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36570Os.11796.1.S1_at11/114+21872547..21874694expressed protein
LOC_Os04g36580OsAffx.8864.1.S1_at8/114+21880103..21884939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g36580Os.46273.1.S1_at4/114+21880103..21884939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g36590Os.53871.1.S1_at10/114+21887649..21890405transposon protein, putative, unclassified, expressed
LOC_Os04g36600Os.55388.1.S1_at11/114+21891458..21892127expressed protein
LOC_Os04g36610OsAffx.14171.1.S1_at11/114+21894524..21896877Endoglucanase 1 precursor, putative
LOC_Os04g36620Os.18761.1.S1_at11/114+21900287..21905858hydrolase, alpha/beta fold family protein, expressed
LOC_Os04g36630Os.53669.1.S1_at11/114+21907685..21910080expressed protein
LOC_Os04g36640NANA4+21912920..21913474AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14171.1.S1_at--788--3911Chr04:21895530..21895554 (25 bp)
CTGGCGGAGGACTTCATCTGTAGGA
LOC_Os04g36610
OsAffx.14171.1.S1_at--837--2051Chr04:21895520..21895544 (25 bp)
ACTTCATCTGTAGGATCCTGCCGGG
LOC_Os04g36610
OsAffx.14171.1.S1_at--29--1831Chr04:21895470..21895494 (25 bp)
ACGCCCGGCGGGATGATGTACAAGT
LOC_Os04g36610
OsAffx.14171.1.S1_at--329--7811Chr04:21895443..21895467 (25 bp)
GGTCACGCCAACCTGCAGTACGTCA
LOC_Os04g36610
OsAffx.14171.1.S1_at--1149--5891Chr04:21895322..21895343 (22 bp)
GAGCTCTCGCCAGGAAACAGGTGGA
LOC_Os04g36610
OsAffx.14171.1.S1_at--306--7911Chr04:21894771..21894795 (25 bp)
GGTTCCCGCAGAGGATACACCACAG
LOC_Os04g36610
OsAffx.14171.1.S1_at--869--4111Chr04:21894711..21894735 (25 bp)
CGCACATCGGCTGCCAGGAAGGGTT
LOC_Os04g36610
OsAffx.14171.1.S1_at--1130--4391Chr04:21894699..21894723 (25 bp)
GCCAGGAAGGGTTCAGCGGCTACTT
LOC_Os04g36610
OsAffx.14171.1.S1_at--305--1511Chr04:21894615..21894639 (25 bp)
AGCACGACGCGTTCCCTGACGAGCG
LOC_Os04g36610
OsAffx.14171.1.S1_at--1149--5691Chr04:21894586..21894610 (25 bp)
GACTACGACCGGTCGGAGCCGACGA
LOC_Os04g36610
OsAffx.14171.1.S1_at--1140--9431Chr04:21894574..21894598 (25 bp)
TCGGAGCCGACGACGTACACCAACG
LOC_Os04g36610
Target Sequence 
CTGGCGGAGGACTTCATCTGTAGGATCCTGCCGGGGTCGCCGTCGTCGACGACGCAGTACACGCCCGGCGGGATGATGTA
CAAGTCCGGTCACGCCAACCTGCAGTACGTCACCTCGGCCAGCTTCCTCCTCACCACGTTCGCCAAGTACATGGCCGTCT
CCAACCACACCTTCTCCTGCCAGAGCCTCCCTGTCACCGCCAAGACCCTCCGAGCTCTCGCCAGGAAACAGGTGGACTAC
ATCCTGGGCGCGAACCCGCAGGGGATGTCGTACATGGTGGGCTACGGCGCGCGGTTCCCGCAGAGGATACACCACAGGGG
GGCGTCGATGCCGTCGGTGGCGGCGTACCCGGCGCACATCGGCTGCCAGGAAGGGTTCAGCGGCTACTTCAACGCCGGCG
GCGCCAACCCCAACGTCCACACCGGCGCCGTCGTCGGCGGGCCGGACCAGCACGACGCGTTCCCTGACGAGCGCGGCGAC
TACGACCGGTCGGAGCCGACGACGTACACCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis