Browse Element(s) Details


OsAffx.14185.1.S1_x_at

Description tigr:9632.m03607
TID=OsAffx.14185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3825011/11hypothetical protein
LOC_Os02g342901/11hypothetical protein
LOC_Os04g147401/11hypothetical protein
LOC_Os05g059901/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38200NANA4+22516334..22518779transposon protein, putative, unclassified
LOC_Os04g38220Os.17681.1.S1_at11/114+22525119..22529016Sugar transporter family protein, expressed
LOC_Os04g38230OsAffx.26371.1.S1_at11/114+22529585..22532153hypothetical protein
LOC_Os04g38230OsAffx.14186.1.S1_at6/114+22529585..22532153hypothetical protein
LOC_Os04g38240OsAffx.25962.1.S1_at9/114+22534220..22540036transposon protein, putative, Mutator sub-class
LOC_Os04g38250OsAffx.14185.1.S1_x_at11/114+22540378..22541278hypothetical protein
LOC_Os04g38260Os.7262.1.S1_at10/114+22542286..22547103expressed protein
LOC_Os04g38270Os.53539.1.S1_at11/114+22554395..22559385expressed protein
LOC_Os04g38274NANA4+22560053..22560482hypothetical protein
LOC_Os04g38280NANA4+22564337..22565046hypothetical protein
LOC_Os04g38290Os.7262.1.S2_at11/114+22565730..22572172expressed protein
LOC_Os04g38290Os.7262.1.S1_at11/114+22565730..22572172expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14185.1.S1_x_at--386--934Chr12:12839947..12839968 (22 bp)
AGGCATCGGGCGCTCGGAAGCCATG
NONE
OsAffx.14185.1.S1_x_at--1067--4074Chr12:12839981..12840005 (25 bp)
CGAGCAGGGCTAGTGGGTCACCACC
NONE
OsAffx.14185.1.S1_x_at--862--1073Chr12:12839986..12840010 (25 bp)
AGGGCTAGTGGGTCACCACCGGAGG
NONE
OsAffx.14185.1.S1_x_at--1027--1711Chr04:22541144..22541168 (25 bp)
ACCACCGGAGGCATGGCTGTGGATT
LOC_Os04g38250
OsAffx.14185.1.S1_x_at--1147--911Chr04:22541136..22541160 (25 bp)
AGGCATGGCTGTGGATTGGGCGAGA
LOC_Os04g38250
OsAffx.14185.1.S1_x_at--800--7471Chr04:22541126..22541150 (25 bp)
GTGGATTGGGCGAGAGGCCGCCGGT
LOC_Os04g38250
OsAffx.14185.1.S1_x_at--785--7533Chr12:12840068..12840092 (25 bp)
GTGGCATGAGCACCGACGCCCAACT
NONE
OsAffx.14185.1.S1_x_at--909--8411Chr04:22541041..22541065 (25 bp)
GGCCGCCACAGTCGCCAGAGCCATG
LOC_Os04g38250
OsAffx.14185.1.S1_x_at--1100--1373Chr12:12840119..12840143 (25 bp)
AGAGCCATGCCTCCGTCGCGAGAGA
NONE
OsAffx.14185.1.S1_x_at--59--56320Chr11:25654975..25655097 (25 bp)
GACATAAATATTATAGCGCCGAAAA
NONE
OsAffx.14185.1.S1_x_at--273--5132Chr04:22540435..22540459 (25 bp)
GCAAAGGGCGGCAGGACCCACTTGC
LOC_Os04g38250
Target Sequence 
AGGCATCGGGCGCTCGGAAGCCATGGGGGATGGGAGCGAGCAGGGCTAGTGGGTCACCACCGGAGGCATGGCTGTGGATT
GGGCGAGAGGCCGCCGGTGACGGCGAGGTCAATGGAGGAGGCGGTGGCATGAGCACCGACGCCCAACTCCTCTCCACCGG
CCGCCACAGTCGCCAGAGCCATGCCTCCGTCGCGAGAGAGGAGAGGGGAGAGAGAGTTGATGAGAGGGGATGGGGATTGA
GGAAGAAGGGGGTTGAGAATGACATAAATATTATAGCGCCGAAAAAATTTGCAAAACTAGACCCTGCCGCCCTTCGCAAG
GGCGGCAAGCCGACGTGGCACACGCCGCGCTGGACGGCGCGGGACGGCCGTCCTCCTGCCCTCTTGCCGCCCTGGCAAAG
GGCGGCAGGACCCACTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14185.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis