Browse Element(s) Details


OsAffx.14190.1.S1_at

Description tigr:9632.m03621
TID=OsAffx.14190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3838010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14190.1.S1_at--51--2371NONE
AAACCTCCAGATCTGCCCGGAGAGC
NONE
OsAffx.14190.1.S1_at--418--5992Chr04:22607042..22607066 (25 bp)
GAGAGCCCAGCTCGGAGATTCTACT
LOC_Os04g38380
OsAffx.14190.1.S1_at--307--1251Chr04:22607027..22607051 (25 bp)
AGATTCTACTCCACGACTGTGTTTT
LOC_Os04g38380
OsAffx.14190.1.S1_at--649--3891Chr04:22607011..22607035 (25 bp)
CTGTGTTTTTCATTGCTCCATGAGG
LOC_Os04g38380
OsAffx.14190.1.S1_at--247--4791Chr04:22606997..22607021 (25 bp)
GCTCCATGAGGAACGCGGAACCAAT
LOC_Os04g38380
OsAffx.14190.1.S1_at--462--3171Chr04:22606976..22607000 (25 bp)
CAATTATTGCTACAGGTACCTCGCC
LOC_Os04g38380
OsAffx.14190.1.S1_at--813--9971Chr04:22606960..22606984 (25 bp)
TACCTCGCCAGGATTTGCATGTTTG
LOC_Os04g38380
OsAffx.14190.1.S1_at--994--10271Chr04:22606947..22606971 (25 bp)
TTTGCATGTTTGGACCCACCACTTT
LOC_Os04g38380
OsAffx.14190.1.S1_at--948--5291Chr04:22606868..22606892 (25 bp)
GAAGGAGGCCGCATCGACTGCCACC
LOC_Os04g38380
OsAffx.14190.1.S1_at--1078--5711Chr04:22606853..22606877 (25 bp)
GACTGCCACCGAAGAGCTCAACAGG
LOC_Os04g38380
OsAffx.14190.1.S1_at--585--5911Chr04:22606840..22606864 (25 bp)
GAGCTCAACAGGGACGGTAGCCTCC
LOC_Os04g38380
Target Sequence 
AAACCTCCAGATCTGCCCGGAGAGCCCAGCTCGGAGATTCTACTCCACGACTGTGTTTTTCATTGCTCCATGAGGAACGC
GGAACCAATTATTGCTACAGGTACCTCGCCAGGATTTGCATGTTTGGACCCACCACTTTCATGCCCCGCGCCACAGGGAA
GGGAGAGGGAGAACGGGAAGAAAGCATCCGACCGAAGGAGGCCGCATCGACTGCCACCGAAGAGCTCAACAGGGACGGTA
GCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis