Browse Element(s) Details


OsAffx.14261.2.S1_at

Description tigr:9632.m02188
TID=OsAffx.14261.2
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transposase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0938911/11Transposable element protein, putative, rve
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09360Os.9147.1.S1_s_at11/115+5216276..5228055glycine-rich protein, putative, expressed
LOC_Os05g09370Os.52103.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09370Os.10656.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14261.2.S1_at--904--1712Chr11:18065872..18065896 (25 bp)
ACCAGACGGGTTAACGGCAGCAAAG
NONE
OsAffx.14261.2.S1_at--898--6752Chr11:18065881..18065905 (25 bp)
GTTAACGGCAGCAAAGAACCTTGCA
NONE
OsAffx.14261.2.S1_at--934--5132Chr11:18065891..18065915 (25 bp)
GCAAAGAACCTTGCAGAGGCGTTCG
NONE
OsAffx.14261.2.S1_at--593--1312Chr11:18065905..18065929 (25 bp)
AGAGGCGTTCGAGCATTATAACGAA
NONE
OsAffx.14261.2.S1_at--242--4952Chr11:18065917..18065941 (25 bp)
GCATTATAACGAATGGCATCCGCAT
NONE
OsAffx.14261.2.S1_at--293--2972Chr11:18065928..18065952 (25 bp)
AATGGCATCCGCATAGTGCGCTGGG
NONE
OsAffx.14261.2.S1_at--375--292Chr11:18065940..18065964 (25 bp)
ATAGTGCGCTGGGTTATCGCTCGCC
NONE
OsAffx.14261.2.S1_at--946--8632Chr11:18065949..18065973 (25 bp)
TGGGTTATCGCTCGCCACGGGAATA
NONE
OsAffx.14261.2.S1_at--563--10312Chr11:18065953..18065977 (25 bp)
TTATCGCTCGCCACGGGAATATCTG
NONE
OsAffx.14261.2.S1_at--350--4172Chr11:18065961..18065985 (25 bp)
CGCCACGGGAATATCTGCGGCAGCG
NONE
OsAffx.14261.2.S1_at--116--252Chr11:18065971..18065995 (25 bp)
ATATCTGCGGCAGCGGGCTTGTAAT
NONE
Target Sequence 
ACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGG
GTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14261.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis