Browse Element(s) Details


OsAffx.14313.1.S1_at

Description tigr:9632.m04586
TID=OsAffx.14313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4749011/11hypothetical protein
LOC_Os08g267102/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein
LOC_Os04g47460OsAffx.4113.1.S1_at11/114+27945284..27946050hypothetical protein
LOC_Os04g47470OsAffx.26502.1.S1_at10/114+27947493..27947976hypothetical protein
LOC_Os04g47480OsAffx.4114.1.S1_at11/114+27951506..27955183hypothetical protein
LOC_Os04g47480OsAffx.24732.1.S1_x_at1/114+27951506..27955183hypothetical protein
LOC_Os04g47490OsAffx.14313.1.S1_at11/114+27958254..27958680hypothetical protein
LOC_Os04g47500OsAffx.9930.1.S1_at6/114+27959638..27960999transposon protein, putative, Pong sub-class
LOC_Os04g47510OsAffx.26503.1.S1_at11/114+27961599..27961955hypothetical protein
LOC_Os04g47520OsAffx.14314.1.S1_x_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_s_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.1.A1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14313.1.S1_at--276--8371Chr04:27958451..27958475 (25 bp)
GGCGTTCGAGAACGGACTTACACAT
LOC_Os04g47490
OsAffx.14313.1.S1_at--484--6711Chr04:27958448..27958472 (25 bp)
GTTCGAGAACGGACTTACACATTGG
LOC_Os04g47490
OsAffx.14313.1.S1_at--121--11Chr04:27958443..27958467 (25 bp)
AGAACGGACTTACACATTGGGCCTC
LOC_Os04g47490
OsAffx.14313.1.S1_at--199--8111Chr04:27958438..27958462 (25 bp)
GGACTTACACATTGGGCCTCCGCGT
LOC_Os04g47490
OsAffx.14313.1.S1_at--164--2191Chr04:27958432..27958456 (25 bp)
ACACATTGGGCCTCCGCGTGCGTGG
LOC_Os04g47490
OsAffx.14313.1.S1_at--280--7631Chr04:27958398..27958422 (25 bp)
GGGAGAAGCCCTTCTTTCCCCATTG
LOC_Os04g47490
OsAffx.14313.1.S1_at--372--10571Chr04:27958387..27958411 (25 bp)
TTCTTTCCCCATTGGGCACCAGGCT
LOC_Os04g47490
OsAffx.14313.1.S1_at--266--3612Chr06:29066835..29066855 (21 bp)
CATTGGGCACCAGGCTCGATGGGCC
NONE
OsAffx.14313.1.S1_at--575--8437Chr08:16111411..16111434 (24 bp)
GGCCTAATGGGCAATCGATCGCCAG
LOC_Os08g26710
OsAffx.14313.1.S1_at--169--815Chr08:16111416..16111451 (25 bp)
ATGGGCAATCGATCGCCAGGGCGAT
LOC_Os08g26710
OsAffx.14313.1.S1_at--19--6391Chr04:27958320..27958344 (25 bp)
GATCGCGGGCGATTGGTCCCGTCCC
LOC_Os04g47490
Target Sequence 
GGCGTTCGAGAACGGACTTACACATTGGGCCTCCGCGTGCGTGGCGCCGATGGGGGAGAAGCCCTTCTTTCCCCATTGGG
CACCAGGCTCGATGGGCCCGGGGGGCCTAATGGGCAATCGATCGCCAGGGCGATCGCGGGCGATTGGTCCCGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis