Browse Element(s) Details


OsAffx.14314.1.S1_x_at

Description tigr:9632.m04590
TID=OsAffx.14314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant protein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4752011/11axi 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein
LOC_Os04g47460OsAffx.4113.1.S1_at11/114+27945284..27946050hypothetical protein
LOC_Os04g47470OsAffx.26502.1.S1_at10/114+27947493..27947976hypothetical protein
LOC_Os04g47480OsAffx.4114.1.S1_at11/114+27951506..27955183hypothetical protein
LOC_Os04g47480OsAffx.24732.1.S1_x_at1/114+27951506..27955183hypothetical protein
LOC_Os04g47490OsAffx.14313.1.S1_at11/114+27958254..27958680hypothetical protein
LOC_Os04g47500OsAffx.9930.1.S1_at6/114+27959638..27960999transposon protein, putative, Pong sub-class
LOC_Os04g47510OsAffx.26503.1.S1_at11/114+27961599..27961955hypothetical protein
LOC_Os04g47520OsAffx.14314.1.S1_x_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_s_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.1.A1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein
LOC_Os04g47560NANA4+27985496..27991883retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14314.1.S1_x_at--294--2751Chr04:27963238..27963262 (25 bp)
AAGAAGCTTTACTCACTCTTTCTCA
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--330--1971Chr04:27963224..27963248 (25 bp)
ACTCTTTCTCAATCGAACCAGCATG
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--193--8151Chr04:27963194..27963218 (25 bp)
GGAAACATTTTCGTCCAAAGTTCAG
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--519--7771Chr04:27963118..27963142 (25 bp)
GGTGAATTCCATGAGCACCCTATGG
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--686--3351Chr04:27963103..27963127 (25 bp)
CACCCTATGGACTGTATTTGCGCAA
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--1008--4931Chr04:27963059..27963083 (25 bp)
GCATAGTAAGCCTCATCCAAGTAAT
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--856--1951Chr04:27962988..27963012 (25 bp)
ACTGGAGAGATCTGGACTACGGCGA
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--588--9931Chr04:27962971..27962995 (25 bp)
TACGGCGAGAATACACCCTTGGGAA
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--1105--5051Chr04:27962805..27962829 (25 bp)
GCAGCGTAATTTATATTCTCCGTTT
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--329--411Chr04:27962760..27962784 (25 bp)
ATCAGTGTGGGCTTCTTACAGAGAA
LOC_Os04g47520
OsAffx.14314.1.S1_x_at--45--5231Chr04:27962713..27962737 (25 bp)
GAATTTGTTACACTTGAATACTTGA
LOC_Os04g47520
Target Sequence 
AAGAAGCTTTACTCACTCTTTCTCAATCGAACCAGCATGAGTTGGGAAACATTTTCGTCCAAAGTTCAGACACTTCAGAA
GGGATTTATGGGGGAGCCCAATGAGATAAAACCTGGAAGAGGTGAATTCCATGAGCACCCTATGGACTGTATTTGCGCAA
AGACAAAGGGAAGAAGTGGGCATAGTAAGCCTCATCCAAGTAATCGGATTGGGGAAGCAATGGAGAAACGTGCTAATGAT
GGTGAGTTTGACTGGAGAGATCTGGACTACGGCGAGAATACACCCTTGGGAAGGGATTCTTCAAATGAGACTGATTCAGA
CATGCATGAATTGGAGGACATGGTCTCAGACTAGACATGTAAAATGGATAGTATCAGAATTAGGTTTTTCAGCTAAACTG
GATTGCTGGTGAAGTTTTTAGCAGAGAGAAGCTGCAGCGTAATTTATATTCTCCGTTTTTTTATGGAGACTTGTAGAAAT
CAGTGTGGGCTTCTTACAGAGAACACAGGTAAATACAAAATTAGTGAATTTGTTACACTTGAATACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14314.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis