Browse Element(s) Details


OsAffx.14387.2.S1_s_at

Description tigr:9639.m02670
TID=OsAffx.14387.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2952011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29480OsAffx.7248.1.S1_at10/1111+16602640..16604041hypothetical protein
LOC_Os11g29490Os.52639.1.S1_at11/1111+16606016..16611363E1-E2 ATPase family protein, expressed
LOC_Os11g29500Os.53478.1.S1_at10/1111+16613305..16613976expressed protein
LOC_Os11g29510OsAffx.31202.1.S1_at11/1111+16615145..16618901Protein kinase domain containing protein
LOC_Os11g29520Os.54766.1.S1_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54766.1.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54638.1.S1_at9/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_at8/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29530OsAffx.29419.3.S1_at2/1111+16633186..16639146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29540OsAffx.13772.1.S1_x_at1/1111+16640249..16641487hypothetical protein
LOC_Os11g29550OsAffx.19069.1.S1_at11/1111+16642440..16644195hypothetical protein
LOC_Os11g29560Os.50255.1.S1_at3/1111+16646891..16649818retrotransposon protein, putative, unclassified
LOC_Os11g29570NANA11+16650148..16655953retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14387.2.S1_s_at--364--7331Chr11:16624257..16624281 (25 bp)
GTGCAGACTGCATTCAAATTAACAA
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--596--2811Chr11:16624234..16624258 (25 bp)
AAGATCTTGCACATTGTTGTTGTCT
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--922--2071Chr11:16624224..16624248 (25 bp)
ACATTGTTGTTGTCTGTGCTGCACT
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--1079--3631Chr11:16624197..16624221 (25 bp)
CTTCCTTCAGCACAGATATACTTCT
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--139--3651Chr11:16624177..16624201 (25 bp)
CTTCTGGAGCCAATGTATACGGTTA
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--250--6891Chr11:16624163..16624187 (25 bp)
GTATACGGTTATATGGCCTTACAAC
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--235--871Chr11:16624151..16624175 (25 bp)
ATGGCCTTACAACAAAGACCACTAT
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--842--2671Chr11:16623979..16624003 (25 bp)
AAGCTTTTAGCCTTGGTTATTGTCA
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--243--1691Chr11:16623971..16623995 (25 bp)
AGCCTTGGTTATTGTCATGGTGTTT
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--672--9611Chr11:16623957..16623981 (25 bp)
TCATGGTGTTTGAGACAATCGTCCG
LOC_Os11g29520
OsAffx.14387.2.S1_s_at--144--5611Chr11:16623944..16623968 (25 bp)
GACAATCGTCCGTGTTGATGGTTAT
LOC_Os11g29520
Target Sequence 
GTGCAGACTGCATTCAAATTAACAAGATCTTGCACATTGTTGTTGTCTGTGCTGCACTTGCTTCCTTCAGCACAGATATA
CTTCTGGAGCCAATGTATACGGTTATATGGCCTTACAACAAAGACCACTATATCTATGCAGTTAATTTGGGTGAATTAAT
TAGTAAGCTTTTAGCCTTGGTTATTGTCATGGTGTTTGAGACAATCGTCCGTGTTGATGGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14387.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis