Browse Element(s) Details


OsAffx.14396.1.S1_at

Description tigr:9632.m05184
TID=OsAffx.14396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5343011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53390OsAffx.4165.1.S1_at11/114+31582871..31584169BTB/POZ domain containing protein
LOC_Os04g53400OsAffx.4166.1.S1_at11/114+31590645..31591772BTB/POZ domain containing protein
LOC_Os04g53410Os.5294.1.S1_at11/114+31592598..31594336BTB/POZ domain containing protein, expressed
LOC_Os04g53420OsAffx.10931.3.S1_at2/114+31595909..31596364hypothetical protein
LOC_Os04g53430OsAffx.14396.1.S1_at11/114+31598562..31599683BTB/POZ domain containing protein, expressed
LOC_Os04g53440Os.27752.1.S1_at11/114+31600401..31604418RNA Binding Protein 45, putative, expressed
LOC_Os04g53450Os.53152.1.S1_at11/114+31605034..31609789expressed protein
LOC_Os04g53460Os.27353.1.S1_at11/114+31612182..31617391AT hook motif family protein, expressed
LOC_Os04g53470Os.10020.1.S1_at10/114+31619083..31622988expressed protein
LOC_Os04g53480Os.35344.18.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480Os.35344.3.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480OsAffx.22940.5.S1_x_at3/114+31624098..31627850transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14396.1.S1_at--919--9211Chr04:31599100..31599124 (25 bp)
TCCACGAGCACCTGGCGCGGATGCT
LOC_Os04g53430
OsAffx.14396.1.S1_at--573--9271Chr04:31599229..31599253 (25 bp)
TCCTGGGCCCGATGATGGAGACCAC
LOC_Os04g53430
OsAffx.14396.1.S1_at--658--8871Chr04:31599241..31599265 (25 bp)
TGATGGAGACCACCGCTCCGTGCAT
LOC_Os04g53430
OsAffx.14396.1.S1_at--577--9051Chr04:31599261..31599285 (25 bp)
TGCATCGAGATCCACGGCGTCGAGC
LOC_Os04g53430
OsAffx.14396.1.S1_at--705--7151Chr04:31599315..31599339 (25 bp)
GTCTACACGGACAGCTGGCCGCTCG
LOC_Os04g53430
OsAffx.14396.1.S1_at--797--1071Chr04:31599436..31599460 (25 bp)
AGGGCATCGACGTGGACAACGCCGC
LOC_Os04g53430
OsAffx.14396.1.S1_at--10--9231Chr04:31599484..31599508 (25 bp)
TCCACCATTGCTCGCAGCTCAGAGA
LOC_Os04g53430
OsAffx.14396.1.S1_at--825--9131Chr04:31599513..31599537 (25 bp)
TGCGTCGCGTTCATTGCCTCGCCGA
LOC_Os04g53430
OsAffx.14396.1.S1_at--758--5891Chr04:31599563..31599587 (25 bp)
GAGCGGCTTCGAGGATCTCATCATG
LOC_Os04g53430
OsAffx.14396.1.S1_at--643--6051Chr04:31599612..31599636 (25 bp)
GAGATTTTGCACAAGGTGTCCGAAT
LOC_Os04g53430
OsAffx.14396.1.S1_at--551--3271Chr04:31599621..31599645 (25 bp)
CACAAGGTGTCCGAATCGTGGAGCG
LOC_Os04g53430
Target Sequence 
TCCACGAGCACCTGGCGCGGATGCTGCGCGACGGGCGGGGCTCGGACGTGGCGTTCCGCGTGGGCGGCAGGGTGCTCCGC
GCGCACCGGTGCGTGCTCGCCGCGCGGTCGCCGGTGTTCGACGCGGAGCTCCTGGGCCCGATGATGGAGACCACCGCTCC
GTGCATCGAGATCCACGGCGTCGAGCCCGCCGCCTTCGAGGCGCTCCTCCGCTTCGTCTACACGGACAGCTGGCCGCTCG
CCGGCGTCGACGTCGCGGCGACGGTGCGCCTGCTCTCCGCGGCGGACAGGTACGGGCTGGAGAGGCTGCGGCTGATGTGC
GAGGAGAAGCTGCACGAGGGCATCGACGTGGACAACGCCGCCGACGTCCTCGCCATGGCGGAGCTCCACCATTGCTCGCA
GCTCAGAGACGCCTGCGTCGCGTTCATTGCCTCGCCGAGCACGCTGGGTCCCGTCCTGGCGTCGAGCGGCTTCGAGGATC
TCATCATGGCGACCGGCGCTTCGGTGACCAAGGAGATTTTGCACAAGGTGTCCGAATCGTGGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis