Browse Element(s) Details


OsAffx.14410.1.S1_s_at

Description tigr:9632.m05269
TID=OsAffx.14410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5423011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54180OsAffx.14409.1.S1_at11/114+32054294..32057778D-mannose binding lectin family protein, expressed
LOC_Os04g54190Os.17555.1.S1_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54190OsAffx.26598.1.S1_x_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54200Os.4807.1.S1_at11/114+32067611..32072391diacylglycerol kinase, putative, expressed
LOC_Os04g54210Os.55270.1.S1_s_at11/114+32075929..32076594expressed protein
LOC_Os04g54220OsAffx.4174.1.S1_at10/114+32076784..32077471hypothetical protein
LOC_Os04g54230OsAffx.14410.1.S1_s_at11/114+32078507..32079062expressed protein
LOC_Os04g54230Os.9913.1.S1_at8/114+32078507..32079062expressed protein
LOC_Os04g54240OsAffx.14412.2.S1_s_at11/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54240Os.9445.1.S1_at8/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54250OsAffx.8980.1.S1_at5/114+32085753..32087552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54260NANA4+32088752..32094910transposon protein, putative, unclassified
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14410.1.S1_s_at--1138--471Chr04:32079001..32079025 (25 bp)
ATCTGAGCGTGCAGAGCTCACACAA
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--427--1371Chr04:32078989..32079013 (25 bp)
AGAGCTCACACAAACACACGTACAG
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--497--2171Chr04:32078976..32079000 (25 bp)
ACACACGTACAGATCGTTCGTACAA
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--310--6391Chr04:32078965..32078989 (25 bp)
GATCGTTCGTACAAGTGCAACAAAC
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--760--8511Chr04:32078839..32078863 (25 bp)
TGGAACTACGCGTTCCGGACGCTCC
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--210--3271Chr04:32078651..32078675 (25 bp)
CAACTAATTGTTACTGAGCTGATCA
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--23--411Chr04:32078630..32078654 (25 bp)
ATCAGTCAGATTAGGATCGTGTTAG
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--679--7871Chr04:32078603..32078627 (25 bp)
GGTTAGATTGGTTTTGGTGCTTGCA
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--602--7771Chr04:32078588..32078612 (25 bp)
GGTGCTTGCAAGATGGAACTGCTTG
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--849--8171Chr04:32078574..32078598 (25 bp)
GGAACTGCTTGTATATGCAGACGAG
LOC_Os04g54230
OsAffx.14410.1.S1_s_at--553--10131Chr04:32078561..32078585 (25 bp)
TATGCAGACGAGTTTTGCACAAGAT
LOC_Os04g54230
Target Sequence 
ATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGG
GAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCC
GCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGC
GGCGGCGCGCGTGCGCTGCAGCCTGCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCACAACTGGGGCCCAAACAACTA
ATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCT
TGTATATGCAGACGAGTTTTGCACAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14410.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis