Browse Element(s) Details


OsAffx.14431.1.S1_x_at

Description tigr:9632.m05452
TID=OsAffx.14431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5599011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os04g55970Os.9597.1.S1_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55970Os.50864.1.S1_x_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55980OsAffx.14430.1.S1_s_at11/114+33128815..33129441expressed protein
LOC_Os04g55980Os.51427.1.S1_at11/114+33128815..33129441expressed protein
LOC_Os04g55990OsAffx.14431.1.S1_x_at11/114+33130600..33131006hypothetical protein
LOC_Os04g56000OsAffx.14430.1.S1_s_at11/114+33133083..33133373hypothetical protein
LOC_Os04g56010OsAffx.14430.1.S1_s_at11/114+33141552..33141881hypothetical protein
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein
LOC_Os04g56030Os.55343.1.S1_at11/114+33155284..33156145expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14431.1.S1_x_at--448--9271Chr04:33130670..33130694 (25 bp)
TCCGTCGCACAGATCTGGCAACAGC
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--241--7231Chr04:33130673..33130697 (25 bp)
GTCGCACAGATCTGGCAACAGCGAC
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--1007--2131Chr04:33130678..33130702 (25 bp)
ACAGATCTGGCAACAGCGACGGGAG
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--478--551Chr04:33130716..33130740 (25 bp)
ATCCGGCCACGGCTACGGCAACGAT
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--128--4371Chr04:33130722..33130746 (25 bp)
CCACGGCTACGGCAACGATGACGAA
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--687--8311Chr04:33130726..33130750 (25 bp)
GGCTACGGCAACGATGACGAAGACG
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--478--4151Chr04:33130780..33130804 (25 bp)
CGCGCGACAGCAGTGGCGGCCACCC
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--746--4511Chr04:33130835..33130859 (25 bp)
GCCGCACAGATCTGGCAACGGCGAT
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--112--8631Chr04:33130859..33130883 (25 bp)
TGGGAACGGGTGACGGTGCGGACGG
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--260--6371Chr04:33130886..33130910 (25 bp)
GATCCGGCCACAGTGACGGCGACGA
LOC_Os04g55990
OsAffx.14431.1.S1_x_at--1108--9271Chr04:33130888..33130912 (25 bp)
TCCGGCCACAGTGACGGCGACGAGA
LOC_Os04g55990
Target Sequence 
TCCGTCGCACAGATCTGGCAACAGCGACGGGAGCGGGCGACGGCGGATCCGGCCACGGCTACGGCAACGATGACGAAGAC
GGGAGGGTGGCGGCGGCGACGACGAGGTGGCGCGCGACAGCAGTGGCGGCCACCCCCTGCGCGGATCCAACGGCGGCGGA
CCTCCGCCGCACAGATCTGGCAACGGCGATGGGAACGGGTGACGGTGCGGACGGCGGATCCGGCCACAGTGACGGCGACG
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14431.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis