Browse Element(s) Details


OsAffx.14448.1.S1_at

Description tigr:9632.m05552
TID=OsAffx.14448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Incw4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5693011/11Beta-fructofuranosidase, insoluble isoenzyme 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56900Os.49568.1.S1_at5/114+33706492..33707924Transferase family protein, expressed
LOC_Os04g56910OsAffx.14446.1.S1_s_at11/114+33709619..33711623Transferase family protein, expressed
LOC_Os04g56920OsAffx.14447.1.S1_at11/114+33721869..33724367Beta-fructofuranosidase, insoluble isoenzyme 6 precursor, putative, expressed
LOC_Os04g56930OsAffx.14448.1.S1_at11/114+33724952..33727453Beta-fructofuranosidase, insoluble isoenzyme 5, putative, expressed
LOC_Os04g56940OsAffx.14449.1.S1_at11/114+33729174..33729788hypothetical protein
LOC_Os04g56950Os.57112.1.S1_at11/114+33731186..33733503SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g56960OsAffx.14450.1.S1_at11/114+33734071..33735797expressed protein
LOC_Os04g56970Os.12173.1.S1_at11/114+33744604..33747684Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
LOC_Os04g56980Os.17366.1.S1_at11/114+33749545..33753475SWIB/MDM2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14448.1.S1_at--997--9371Chr04:33725787..33725811 (25 bp)
TCGAGATCCCGAACCTGGAGGACGA
LOC_Os04g56930
OsAffx.14448.1.S1_at--829--4071Chr04:33725759..33725783 (25 bp)
CGAGAGCTTCGATCCCGACTGGCTG
LOC_Os04g56930
OsAffx.14448.1.S1_at--188--8571Chr04:33725736..33725760 (25 bp)
TGGATCCCCACAAGCTGTGCAAGGA
LOC_Os04g56930
OsAffx.14448.1.S1_at--1136--5551Chr04:33725598..33725622 (25 bp)
GAAAGTACAAGGTCTTCATGTGCAC
LOC_Os04g56930
OsAffx.14448.1.S1_at--987--10531Chr04:33725584..33725608 (25 bp)
TTCATGTGCACTGACCTCACAAGGT
LOC_Os04g56930
OsAffx.14448.1.S1_at--813--7031Chr04:33725436..33725460 (25 bp)
GTACAAGGACGCTTACGGAGGATTC
LOC_Os04g56930
OsAffx.14448.1.S1_at--164--5511Chr04:33725294..33725395 (25 bp)
GAACACTGATTGACCACTCGATGAT
LOC_Os04g56930
OsAffx.14448.1.S1_at--908--5871Chr04:33725246..33725270 (25 bp)
GAGCGTGCATCACAACCCGGGTATA
LOC_Os04g56930
OsAffx.14448.1.S1_at--105--2731Chr04:33725203..33725227 (25 bp)
AAGCAGCAGTCACCTGTACGTGTTC
LOC_Os04g56930
OsAffx.14448.1.S1_at--852--6751Chr04:33725182..33725206 (25 bp)
GTTCAACAATGGGTCAGGCACGGTG
LOC_Os04g56930
OsAffx.14448.1.S1_at--712--7351Chr04:33725160..33725184 (25 bp)
GTGAATGTGTCCAAGCTCGAGGCGT
LOC_Os04g56930
Target Sequence 
TCGAGATCCCGAACCTGGAGGACGAGGCCGAGAGCTTCGATCCCGACTGGCTGGATCCCCACAAGCTGTGCAAGGACAAG
GGCGCCGCCTCCGCGCACGGCGGCGTCGGCCCGTTCGGGCTCATCGTCATGGCCTCCGGCGACCTGCAGGAGCAAACCGC
CGTCTTCTTCAGAGTGTTCAAACACCATGGAAAGTACAAGGTCTTCATGTGCACTGACCTCACAAGGTCATCGACAAAAG
CAGATGTGTACAAGGACGCTTACGGAGGATTCGTTGATGTGGACATACAGAAGGACAAGAGCATATCACTCAGAACACTG
ATTGACCACTCGATGATTGAGAGCTTCGGAGGCGGTGGCCGAGCGTGCATCACAACCCGGGTATACCCTGAGCACGCAGC
AACAAGCAGCAGTCACCTGTACGTGTTCAACAATGGGTCAGGCACGGTGAATGTGTCCAAGCTCGAGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis