Browse Element(s) Details


OsAffx.14458.1.S1_x_at

Description tigr:9632.m05642
TID=OsAffx.14458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5776011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57720Os.24952.1.S1_at10/114+34156916..34158030Two-component response regulator ARR3, putative, expressed
LOC_Os04g57730OsAffx.4201.1.S1_at11/114+34163604..34168701Uracil-DNA glycosylase, putative, expressed
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14458.1.S1_x_at--458--8591Chr04:34181672..34181696 (25 bp)
TGGTCTCCGGCGAATTCCCGTGGAC
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--570--4771Chr04:34181661..34181685 (25 bp)
GAATTCCCGTGGACCGAGGCCTTCA
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--530--2611Chr04:34181600..34181624 (25 bp)
AACCCAGCGAGGTGGACGCCGTCGA
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--845--6211Chr04:34181574..34181598 (25 bp)
GAGGCCGTCGGCAAGCTCAAATCCG
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--1027--2691Chr04:34181562..34181586 (25 bp)
AAGCTCAAATCCGTGCTCGACAACG
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--879--5151Chr04:34181402..34181426 (25 bp)
GCAACGCGGAGCTCGGGAGCATCAT
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--460--5931Chr04:34181386..34181410 (25 bp)
GAGCATCATGGTGGGACCCGCCGAA
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--1064--8491Chr04:34181375..34181399 (25 bp)
TGGGACCCGCCGAAAAGACGCCGTG
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--1129--5711Chr04:34181359..34181383 (25 bp)
GACGCCGTGTAAATAGCCGTTTCCA
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--701--9831Chr04:34181350..34181374 (25 bp)
TAAATAGCCGTTTCCACCGTGTGTC
LOC_Os04g57760
OsAffx.14458.1.S1_x_at--676--1771Chr04:34181335..34181359 (25 bp)
ACCGTGTGTCGTCCGTAGCCATACT
LOC_Os04g57760
Target Sequence 
TGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGC
GAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGC
GCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTCCGACGCCGTCA
ACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCG
TGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14458.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis