Browse Element(s) Details


OsAffx.14491.1.S1_at

Description tigr:9633.m00068
TID=OsAffx.14491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0158011/11Integral membrane protein DUF6 containing protein
LOC_Os02g434001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os05g01570Os.7779.1.S1_x_at11/115+316959..318821Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein
LOC_Os05g01590Os.54343.1.S1_at10/115+329682..332081DnaJ domain containing protein, expressed
LOC_Os05g01600Os.11740.1.S1_at11/115+332178..334669Actin-97, putative, expressed
LOC_Os05g01610OsAffx.26679.1.S1_at11/115+340542..344003Chromosome condensation factor, putative
LOC_Os05g01620OsAffx.14492.1.S1_at11/115+346519..348964F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14491.1.S1_at--498--9071Chr05:324221..324245 (25 bp)
TGCTTCGCCGGAGTCATGGTGCTCG
LOC_Os05g01580
OsAffx.14491.1.S1_at--934--1151Chr05:324232..324256 (25 bp)
AGTCATGGTGCTCGCCTTGTACAAG
LOC_Os05g01580
OsAffx.14491.1.S1_at--788--3591Chr05:324247..324271 (25 bp)
CTTGTACAAGGGTCCGGCGCTGAAC
LOC_Os05g01580
OsAffx.14491.1.S1_at--620--9572Chr05:324455..324479 (25 bp)
TCTTCTCCACGGTGCAGACGGCGGT
LOC_Os05g01580
OsAffx.14491.1.S1_at--1003--1311Chr05:324503..324527 (25 bp)
AGATGGCCAGGTGGAAGCTCCGCCT
LOC_Os05g01580
OsAffx.14491.1.S1_at--510--9251Chr05:324548..325012 (25 bp)
TCCTCTACACCGGTTTGGTGGTGAC
LOC_Os05g01580
OsAffx.14491.1.S1_at--273--7451Chr05:325017..325041 (25 bp)
GTGTCATACTACCTGCAGGCGTGGT
LOC_Os05g01580
OsAffx.14491.1.S1_at--581--8071Chr05:325046..325070 (25 bp)
GGAGCTCAAGGGACCCGTGTTCTTG
LOC_Os05g01580
OsAffx.14491.1.S1_at--211--8791Chr05:325063..325087 (25 bp)
TGTTCTTGGCCATGTCCAACCGAGA
LOC_Os05g01580
OsAffx.14491.1.S1_at--733--7271Chr05:325090..325215 (25 bp)
GTCCACCTCGGCAGCTAATTGAATT
LOC_Os05g01580
OsAffx.14491.1.S1_at--30--3191Chr05:325340..325364 (25 bp)
CAATCCCACCACAAAATTTCTACAG
LOC_Os05g01580
Target Sequence 
TGCTTCGCCGGAGTCATGGTGCTCGCCTTGTACAAGGGTCCGGCGCTGAACCCAGCGGCGGTGCTCAGGGAGTTCCCCAA
CAAGATGCTGGTGACGGCGGCGCAGTGCGTCTTCTCCACGGTGCAGACGGCGGTGGTGGCGGCGGCGGCGGAGAGGGAGA
TGGCCAGGTGGAAGCTCCGCCTCGACATCAGCCTGCTCGCCGTCCTCTACACCGGTTTGGTGGTGACGGGGGTGTCATAC
TACCTGCAGGCGTGGTGCGTGGAGCTCAAGGGACCCGTGTTCTTGGCCATGTCCAACCGAGATCGTCCACCTCGGCAGCT
AATTGAATTCATGGACAGTATTATAGGGGGGATTCTGCTGGTGGGAGGGCTCTACAGCGTGCTGTGGGGTAAGAGCGCCG
AGATGACGATGAATGGCAATGGTGATGACCAGCAGCAGCAGCAGCAGCAGCAGCAATCCCACCACAAAATTTCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis