Browse Element(s) Details


OsAffx.14528.2.S1_x_at

Description tigr:9640.m03120
TID=OsAffx.14528.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3214011/11transposon protein, putative, unclassified
LOC_Os05g038006/11transposon protein, putative, unclassified
LOC_Os03g463401/11pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g061701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32090OsAffx.22421.2.S1_at5/1112+19328425..19331315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32090OsAffx.22421.1.S1_at4/1112+19328425..19331315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32090OsAffx.16244.1.S1_x_at1/1112+19328425..19331315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32110Os.27435.1.S1_x_at6/1112+19334544..19337666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32110Os.46334.1.S1_x_at4/1112+19334544..19337666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32120OsAffx.8398.1.S1_at7/1112+19341147..19347783transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32120Os.2106.1.S2_at1/1112+19341147..19347783transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32130NANA12+19352923..19353761Trehalose-phosphatase family protein
LOC_Os12g32140OsAffx.14528.2.S1_x_at11/1112+19355392..19358524transposon protein, putative, unclassified
LOC_Os12g32140OsAffx.14528.3.S1_x_at4/1112+19355392..19358524transposon protein, putative, unclassified
LOC_Os12g32140OsAffx.14528.1.S1_x_at4/1112+19355392..19358524transposon protein, putative, unclassified
LOC_Os12g32140OsAffx.14528.3.S1_at3/1112+19355392..19358524transposon protein, putative, unclassified
LOC_Os12g32150NANA12+19363430..19364200hypothetical protein
LOC_Os12g32160OsAffx.19928.1.S1_at10/1112+19376658..19379532hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14528.2.S1_x_at--596--5272Chr05:1670619..1670643 (25 bp)
GAATGCTCGAGGGTCCGAACTTTTT
LOC_Os05g03800
OsAffx.14528.2.S1_x_at--134--4231Chr12:19356374..19356398 (25 bp)
CCGAACTTTTTGACTTGGCATCTAA
LOC_Os12g32140
OsAffx.14528.2.S1_x_at--437--5392Chr05:1670739..1670763 (25 bp)
GAAGCACACGCATGTTGACGAGGTT
LOC_Os05g03800
OsAffx.14528.2.S1_x_at--805--5311Chr12:19356222..19356246 (25 bp)
GAAGGTTCTGTTTTAGATCCCATCT
LOC_Os12g32140
OsAffx.14528.2.S1_x_at--492--3551Chr12:19356202..19356226 (25 bp)
CATCTGTGTAGCCACCAAGGGTGCA
LOC_Os12g32140
OsAffx.14528.2.S1_x_at--863--2812Chr05:1670865..1671083 (25 bp)
AAGATTGTGCAGTCGTTGTCGCCAA
LOC_Os05g03800
OsAffx.14528.2.S1_x_at--981--2072Chr05:1670900..1670924 (25 bp)
ACATTCGCCGTTGTCCAGAGGCAAA
LOC_Os05g03800
OsAffx.14528.2.S1_x_at--910--6513Chr05:1671204..1671228 (25 bp)
GATTTGGCCCTTATTGAGAGTCTGA
LOC_Os05g03800
OsAffx.14528.2.S1_x_at--734--10333Chr05:1671257..1671443 (25 bp)
TTTACACTGTTTGGAGACTCTTCGG
LOC_Os05g03800
OsAffx.14528.2.S1_x_at--695--10231Chr12:19355536..19355560 (25 bp)
TTTGGCCAACAATATTCGTGCTCAG
LOC_Os12g32140
OsAffx.14528.2.S1_x_at--319--111Chr12:19355523..19355547 (25 bp)
ATTCGTGCTCAGGATGCTACAATTA
LOC_Os12g32140
Target Sequence 
GAATGCTCGAGGGTCCGAACTTTTTGACTTGGCATCTAATAGTTGTGAGTTGTTTGGGGAGGTGAAAGAATACATGGAGA
GTCAACTATCAAAAATAAGTTCTTCTAATGCAGCAACCAAGAAGCACACGCATGTTGACGAGGTTGGTGAAACATCACAT
AGGCCTGAAGGTTCTGTTTTAGATCCCATCTGTGTAGCCACCAAGGGTGCACCTAGGAGCATGAAAGGATGGGATGAGCA
TCGGCCAAGATTGTGCAGTCGTTGTCGCCAACCAGGCCATGACATTCGCCGTTGTCCAGAGGCAAAGCGAGAAGAACAAG
ATTTGGCCCTTATTGAGAGTCTGAAAATTGTTGTAATATTGTATGACATAAATTTACACTGTTTGGAGACTCTTCGGGTG
AAAGATGAGGAGTTGCAGAATTTGGCCAACAATATTCGTGCTCAGGATGCTACAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14528.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis