Browse Element(s) Details


OsAffx.14578.1.S1_x_at

Description tigr:9633.m00650
TID=OsAffx.14578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0724011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07210Os.50277.1.S1_at11/115+3785993..3788799ZIP zinc/iron transport family protein, expressed
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein
LOC_Os05g07250OsAffx.27250.3.S1_x_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_s_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_x_at5/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_at3/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.22147.1.S1_x_at2/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_x_at1/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07260Os.24661.1.S1_at11/115+3817701..3821188phosphatidylinositolglycan, putative, expressed
LOC_Os05g07270OsAffx.14579.1.S1_at10/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07270OsAffx.28759.1.S1_x_at1/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07280Os.55964.1.S1_at10/115+3836189..3837276expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14578.1.S1_x_at--109--8411Chr05:3811092..3811116 (25 bp)
GGCGCCCTCGACCTGATCAGGATCG
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--637--1751Chr05:3811102..3811126 (25 bp)
ACCTGATCAGGATCGTCCACCTCAA
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--813--4511Chr05:3811129..3811153 (25 bp)
GCCGCGTCGAGGAGTACGGGCGCCC
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--560--1491Chr05:3811200..3811224 (25 bp)
AGCAAGCCGTGCTGCTCCCAGGGCG
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--967--7231Chr05:3811230..3811254 (25 bp)
GTCGCCGTGCGCAGGACGATCCTCA
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--6--7291Chr05:3811236..3811260 (25 bp)
GTGCGCAGGACGATCCTCATCGTCT
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--192--9411Chr05:3811255..3811279 (25 bp)
TCGTCTCGCCGGACTCCGAGCTGGA
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--292--3811Chr05:3811313..3811337 (25 bp)
CTCCGTGCCGGACAAAAAGAAGAAG
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--1000--4071Chr05:3811372..3811396 (25 bp)
CGAGCGGCCGCCACGGCAAGAGCAA
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--391--5191Chr05:3811426..3811450 (25 bp)
GCAATGGCCGTCGTCACGTGCGCGA
LOC_Os05g07240
OsAffx.14578.1.S1_x_at--949--871Chr05:3811429..3811453 (25 bp)
ATGGCCGTCGTCACGTGCGCGACGT
LOC_Os05g07240
Target Sequence 
GGCGCCCTCGACCTGATCAGGATCGTCCACCTCAACGGCCGCGTCGAGGAGTACGGGCGCCCGGTCGCCGCCGGCGAGAT
CCTCGCCGCCAACCCCAACCACGTCCTCAGCAAGCCGTGCTGCTCCCAGGGCGGCGCCGTCGCCGTGCGCAGGACGATCC
TCATCGTCTCGCCGGACTCCGAGCTGGAGCGCGGCGAGATCTACTTCCTCATCCCGGCCTCCTCCGTGCCGGACAAAAAG
AAGAAGAGCGGCGGCGGCGCCGCCGCGGCGACGCCGGCGGCGAGCGGCCGCCACGGCAAGAGCAAGCAGGCGGCGCCGTC
GTCGGATCACGGGGGCAATGGCCGTCGTCACGTGCGCGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14578.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis