Browse Element(s) Details


OsAffx.14635.1.S1_x_at

Description tigr:9633.m00989
TID=OsAffx.14635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1126011/11expressed protein
LOC_Os04g272504/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein
LOC_Os05g11230OsAffx.26827.1.S1_at10/115+6321674..6322549hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_x_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11250Os.56031.1.S1_at11/115+6328307..6329255expressed protein
LOC_Os05g11260Os.38301.2.A1_at11/115+6337424..6341719expressed protein
LOC_Os05g11260OsAffx.14635.1.S1_x_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_s_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_a_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.27133.2.S1_at5/115+6337424..6341719expressed protein
LOC_Os05g11270OsAffx.20490.1.S1_at1/115+6345492..6346607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11280NANA5+6347217..6348704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11290OsAffx.30226.2.S1_x_at2/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.442.1.S1_x_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.30226.2.S1_s_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11300OsAffx.26829.1.S1_at11/115+6359459..6360295hypothetical protein
LOC_Os05g11310OsAffx.26830.1.S1_at11/115+6362694..6364845hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14635.1.S1_x_at--350--5131Chr05:6338935..6338959 (25 bp)
GCACAACAAACTTTATCGCTGACAA
LOC_Os05g11260
OsAffx.14635.1.S1_x_at--93--531Chr05:6338924..6338945 (22 bp)
ATCGCTGACAATTCAATGGAGGACA
LOC_Os05g11260
OsAffx.14635.1.S1_x_at--855--8011Chr05:6338656..6338678 (23 bp)
GGAGGACACAAATATCCATGTTCAG
LOC_Os05g11260
OsAffx.14635.1.S1_x_at--178--7872Chr04:15913765..15913789 (25 bp)
GGTTTTGCAACTACCAACCAAGCAA
LOC_Os04g27250
OsAffx.14635.1.S1_x_at--1131--2032Chr04:15913938..15913962 (25 bp)
ACTTATGGCCAAAATCACCTTGAGA
LOC_Os04g27250
OsAffx.14635.1.S1_x_at--715--912Chr04:15913987..15914011 (25 bp)
AGGCTAGTCTTCACTTTTTTATTGA
LOC_Os04g27250
OsAffx.14635.1.S1_x_at--582--5432Chr04:15914102..15914126 (25 bp)
GAACCAGAATGATCACATGCAACAA
LOC_Os04g27250
OsAffx.14635.1.S1_x_at--1026--10472Chr05:8754111..8754135 (25 bp)
TTACTGCAAGGTGGACAACTGTCAT
NONE
OsAffx.14635.1.S1_x_at--195--2573Chr05:8754127..8754151 (25 bp)
AACTGTCATCTAAAGATCCCTTGTG
NONE
OsAffx.14635.1.S1_x_at--693--8613Chr05:8754180..8754204 (25 bp)
TGGTGGCAATGATAGTGGCAACTTC
NONE
OsAffx.14635.1.S1_x_at--293--6173Chr05:8754282..8754306 (25 bp)
GAGGATGATTTTCCATGTAATACAA
NONE
Target Sequence 
GCACAACAAACTTTATCGCTGACAATTCAATGGAGGACACAAATATCCATGTTCAGAACAAGGTTTTGCAACTACCAACC
AAGCAATCTACTATATATAAGAGCAATCAAACTTATGGCCAAAATCACCTTGAGAAACAGAGGAAGATTATTTGTGTGAA
GGCTAGTCTTCACTTTTTTATTGATTGGAACTCACAGTGTTTAATTATAAAAATAACTAGATTATTGTAGTTTGTGCCAA
TATTTTGATATTCCATGCAGAATAAAGGAAACATGAACCAGAATGATCACATGCAACAAGGGAAGAATAATTCTAATGCT
TATAAGGTTGACAAGATAAATGGATCATGATCTGGGGCAATATGGTTACTGCAAGGTGGACAACTGTCATCTAAAGATCC
CTTGTGAATATGATGATGACTGTAATATGGAAGATGGTGGCAATGATAGTGGCAACTTCAGATGCATGTTTTTTTTTCTA
TAGTTTAGTTTACATTTGTGCATGATGTTCTGAACAAAATTTAATGTCATGACTTATGAGGATGATTTTCCATGTAATAC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14635.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis