Browse Element(s) Details


OsAffx.14657.1.S1_at

Description tigr:9633.m01099
TID=OsAffx.14657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1233011/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12300Os.26561.1.S1_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_x_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.27790.2.A1_x_at4/115+7041323..7045443expressed protein
LOC_Os05g12300OsAffx.4936.1.S1_at1/115+7041323..7045443expressed protein
LOC_Os05g12310NANA5+7055799..7057673retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12320OsAffx.14656.1.S1_at11/115+7062200..7064348MtN3/saliva family protein, expressed
LOC_Os05g12330OsAffx.14657.1.S1_at11/115+7066396..7067821esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g12340Os.1709.1.S1_x_at11/115+7069879..7073434retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12350NANA5+7074041..7078721hypothetical protein
LOC_Os05g12360NANA5+7085977..7090113retrotransposon protein, putative, unclassified
LOC_Os05g12370Os.51419.1.S1_at11/115+7092499..7092896expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14657.1.S1_at--127--9011Chr05:7067450..7067474 (25 bp)
TGAAGGATGCGCTCGATGCTATCGA
LOC_Os05g12330
OsAffx.14657.1.S1_at--240--5351Chr05:7067427..7067451 (25 bp)
GAAGTTGTCACCTTTGATTACCCAT
LOC_Os05g12330
OsAffx.14657.1.S1_at--123--3631Chr05:7067237..7067261 (25 bp)
CTTGTTGATCATCACCTTGGTGTGG
LOC_Os05g12330
OsAffx.14657.1.S1_at--708--8751Chr05:7067202..7067226 (25 bp)
TGTAGCGAAGCATCCAGGGCACCCA
LOC_Os05g12330
OsAffx.14657.1.S1_at--313--3471Chr05:7067188..7067212 (25 bp)
CAGGGCACCCACTTGTTCTGATGGG
LOC_Os05g12330
OsAffx.14657.1.S1_at--292--3691Chr05:7067059..7067182 (25 bp)
CTATGGGTTCAAGGGTCAGCTGTAT
LOC_Os05g12330
OsAffx.14657.1.S1_at--100--4731Chr05:7067003..7067027 (25 bp)
GCTGTCATATGCTTGGGTTATCCGT
LOC_Os05g12330
OsAffx.14657.1.S1_at--873--7651Chr05:7066718..7066742 (25 bp)
GGGATGAGACACTACTGAAACTGAA
LOC_Os05g12330
OsAffx.14657.1.S1_at--1142--591Chr05:7066570..7066594 (25 bp)
ATGCCCTTTGGATAAGCTTGAGGCC
LOC_Os05g12330
OsAffx.14657.1.S1_at--86--8891Chr05:7066552..7066576 (25 bp)
TGAGGCCACTCGCAAGAAGATGAAC
LOC_Os05g12330
OsAffx.14657.1.S1_at--1034--7751Chr05:7066497..7066521 (25 bp)
GGTGACCACTCCTTTAAAATCGGCA
LOC_Os05g12330
Target Sequence 
TGAAGGATGCGCTCGATGCTATCGAAGTTGTCACCTTTGATTACCCATATATGTCAGGTGGGAAGCGCAGGGCTCCGCCG
AAGGCGGAGAAGCTTGTTGATCATCACCTTGGTGTGGTGAAGGACGCTGTAGCGAAGCATCCAGGGCACCCACTTGTTCT
GATGGGGAAGTCTATGGGTTCAAGGGTCAGCTGTATGGTGGCTGATTCAGATGATATTATTGTTTCTGCTGTCATATGCT
TGGGTTATCCGTTAAAGGGAGTGAACGGGGCAGTGAGGGATGAGACACTACTGAAACTGAAGATTCCAACAATGTTTGTG
CAGGGCAATAAAGATGGGTTATGCCCTTTGGATAAGCTTGAGGCCACTCGCAAGAAGATGAACTGCAAGAATGAACTGCA
TGTTATTGATGGTGGTGACCACTCCTTTAAAATCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis