Browse Element(s) Details


OsAffx.14680.1.S1_at

Description tigr:9633.m01225
TID=OsAffx.14680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1407011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14034Os.16349.1.S1_at10/115+7824648..7825593expressed protein
LOC_Os05g14040OsAffx.26875.1.S1_at7/115+7829161..7829576D111/G-patch domain-containing protein, putative
LOC_Os05g14050NANA5+7832249..7834826hypothetical protein
LOC_Os05g14060OsAffx.11259.1.S1_at3/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.1585.1.S1_at2/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.22850.1.S1_x_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.17107.1.S1_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14070OsAffx.14680.1.S1_at11/115+7842128..7843086hypothetical protein
LOC_Os05g14080OsAffx.14681.1.S1_at11/115+7843586..7845054hypothetical protein
LOC_Os05g14090OsAffx.13127.1.S1_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.13127.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.22699.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14100Os.31845.1.S1_x_at1/115+7853969..7856906hypothetical protein
LOC_Os05g14110NANA5+7861728..7868119transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14680.1.S1_at--709--2891Chr05:7843032..7843056 (25 bp)
AAGGTGAGCCGTGGCGCCCTTCAAC
LOC_Os05g14070
OsAffx.14680.1.S1_at--436--7231Chr05:7842985..7843009 (25 bp)
GTCGCCGGCTGTTAAGGAGGAACAA
LOC_Os05g14070
OsAffx.14680.1.S1_at--336--6691Chr05:7842952..7842976 (25 bp)
GTTGCCGGAGCACCAAACTATAGCA
LOC_Os05g14070
OsAffx.14680.1.S1_at--944--291Chr05:7842507..7842957 (25 bp)
ATAGCAAGCTGCAAAGAGCCTGCGA
LOC_Os05g14070
OsAffx.14680.1.S1_at--6--1691Chr05:7842491..7842515 (25 bp)
AGCCTGCGAGCCTTAGGGCGCAAAT
LOC_Os05g14070
OsAffx.14680.1.S1_at--822--5091Chr05:7842454..7842478 (25 bp)
GCACGAGTTGTTCCATCTACTATTT
LOC_Os05g14070
OsAffx.14680.1.S1_at--1149--6631Chr05:7842448..7842472 (25 bp)
GTTGTTCCATCTACTATTTGAGCTG
LOC_Os05g14070
OsAffx.14680.1.S1_at--373--5531Chr05:7842393..7842417 (25 bp)
GAAAAACTCAGCATCCAGGACGAAA
LOC_Os05g14070
OsAffx.14680.1.S1_at--532--5891Chr05:7842357..7842381 (25 bp)
GAGCTTACGCCATACCGTGAGCTTA
LOC_Os05g14070
OsAffx.14680.1.S1_at--425--7371Chr05:7842341..7842365 (25 bp)
GTGAGCTTAAGGCAATGGCTGATAA
LOC_Os05g14070
OsAffx.14680.1.S1_at--639--3071Chr05:7842158..7842182 (25 bp)
AATAACCTATGTTTTGGGCTTCGCT
LOC_Os05g14070
Target Sequence 
AAGGTGAGCCGTGGCGCCCTTCAACAGGCGACGGCTTTCGTATCGCCGTCGCCGGCTGTTAAGGAGGAACAACGGCGTCT
GTTGCCGGAGCACCAAACTATAGCAAGCTGCAAAGAGCCTGCGAGCCTTAGGGCGCAAATTGAGGAGAAGAAGCACGAGT
TGTTCCATCTACTATTTGAGCTGAAATATGGCAGGAAAAGTATAGCTGGTGGTGAAAAACTCAGCATCCAGGACGAAAGG
ATACTCGGGGAGCTTACGCCATACCGTGAGCTTAAGGCAATGGCTGATAAGTATGGACTAAAACAAGCCTTGAAATATAT
TGGAATAACCTATGTTTTGGGCTTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis