Browse Element(s) Details


OsAffx.1477.1.S1_at

Description gb:NM_186485.1
DB_XREF= gi:34900055
TID=OsAffx.1477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1664_D08.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1113011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11070Os.44419.1.S1_at11/117+6116162..6119949bZIP protein, putative, expressed
LOC_Os07g11080OsAffx.8864.1.S1_at8/117+6123094..6126197retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11090Os.46273.1.S1_at3/117+6126567..6127886retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11100OsAffx.16208.1.S1_at11/117+6131217..6131664hypothetical protein
LOC_Os07g11100OsAffx.20978.1.S1_at5/117+6131217..6131664hypothetical protein
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed
LOC_Os07g11130OsAffx.1477.1.S1_at11/117+6144464..6144910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11150Os.44418.2.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11150Os.44418.1.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11160OsAffx.20490.1.S1_at6/117+6153663..6157210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11170OsAffx.10237.1.S1_at8/117+6157915..6158907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11180NANA7+6160014..6162998retrotransposon protein, putative, unclassified
LOC_Os07g11190OsAffx.8166.1.S1_at1/117+6164271..6166541transposon protein, putative, unclassified
LOC_Os07g11200NANA7+6166805..6169329retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1477.1.S1_at--438--931Chr07:6144510..6144534 (25 bp)
AGGCATACCGATTTGGCAGCCTCAA
LOC_Os07g11130
OsAffx.1477.1.S1_at--739--3111Chr07:6144557..6144581 (25 bp)
AATATTTCTCTTCTCGGCTCAGATT
LOC_Os07g11130
OsAffx.1477.1.S1_at--652--9551Chr07:6144606..6144630 (25 bp)
TCTTTGCTCCATTATGTCTCCCAAA
LOC_Os07g11130
OsAffx.1477.1.S1_at--377--111Chr07:6144645..6144669 (25 bp)
ATTCTAAGACCATCTCATCTGAGTT
LOC_Os07g11130
OsAffx.1477.1.S1_at--473--2651Chr07:6144677..6144701 (25 bp)
AACCACTCGGATGAGGTCTCGTCAA
LOC_Os07g11130
OsAffx.1477.1.S1_at--54--9411Chr07:6144695..6144719 (25 bp)
TCGTCAACTTCTTCGCAATCAAATC
LOC_Os07g11130
OsAffx.1477.1.S1_at--917--6191Chr07:6144725..6144749 (25 bp)
GAGGCAACTTATCCGTCAATCTTGA
LOC_Os07g11130
OsAffx.1477.1.S1_at--143--3191Chr07:6144741..6144765 (25 bp)
CAATCTTGATGTGGCTTCCCGACGA
LOC_Os07g11130
OsAffx.1477.1.S1_at--551--3911Chr07:6144767..6144791 (25 bp)
CTGGCTGCTGTTTTTACTACAAGAG
LOC_Os07g11130
OsAffx.1477.1.S1_at--376--1031Chr07:6144806..6144830 (25 bp)
AGGTCCAGATTAAACTCGGCTTCGA
LOC_Os07g11130
OsAffx.1477.1.S1_at--779--3731Chr07:6144832..6144856 (25 bp)
CTCAGTTCAATCTGGCTCTAGGGAA
LOC_Os07g11130
Target Sequence 
AGGCATACCGATTTGGCAGCCTCAACTTCATCACCGACGACTTCGACAATATTTCTCTTCTCGGCTCAGATTCGAACCAG
TCGGGAGGGGATGCCATCTTTGCTCCATTATGTCTCCCAAACTCGGCTGAAATCTATTCTAAGACCATCTCATCTGAGTT
GGATTCAAACCACTCGGATGAGGTCTCGTCAACTTCTTCGCAATCAAATCAAGGAGAGGCAACTTATCCGTCAATCTTGA
TGTGGCTTCCCGACGATCTGGCTGCTGTTTTTACTACAAGAGCGTCTTCTCCCCGTAGGTCCAGATTAAACTCGGCTTCG
ACCTCAGTTCAATCTGGCTCTAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis