Browse Element(s) Details


OsAffx.14771.1.S1_at

Description tigr:9633.m01875
TID=OsAffx.14771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2059011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20540NANA5+12039106..12039442hypothetical protein
LOC_Os05g20550NANA5+12040339..12041052retrotransposon, putative, centromere-specific
LOC_Os05g20560NANA5+12043000..12044515retrotransposon, putative, centromere-specific, expressed
LOC_Os05g20570Os.22396.1.S1_at11/115+12048811..12049866pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g20579NANA5+12053572..12053991NA
LOC_Os05g20590OsAffx.14771.1.S1_at11/115+12064091..12065637hypothetical protein
LOC_Os05g20590Os.39596.1.A1_x_at1/115+12064091..12065637hypothetical protein
LOC_Os05g20590Os.31845.2.S1_x_at1/115+12064091..12065637hypothetical protein
LOC_Os05g20600NANA5+12068562..12068888hypothetical protein
LOC_Os05g20610NANA5+12070423..12071679retrotransposon protein, putative, unclassified, expressed
LOC_Os05g20620Os.53842.1.S2_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.53842.1.S1_x_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.53842.2.S1_x_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.46610.1.A1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20620OsAffx.22452.1.S1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20620OsAffx.27810.1.S1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20630Os.46610.1.A1_x_at3/115+12080425..12084817hypothetical protein
LOC_Os05g20630OsAffx.3347.1.S1_at1/115+12080425..12084817hypothetical protein
LOC_Os05g20640NANA5+12085539..12085985hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14771.1.S1_at--170--6051Chr05:12065029..12065053 (25 bp)
GAGATATGGACATGCTCTAATGGAT
LOC_Os05g20590
OsAffx.14771.1.S1_at--570--9515Chr12:9485199..9485220 (22 bp)
TCTAATGGATGTATCATTCGCCGAG
NONE
OsAffx.14771.1.S1_at--414--91Chr05:12065059..12065083 (25 bp)
ATTCGCCGAGGTATTTGCCGCCATA
LOC_Os05g20590
OsAffx.14771.1.S1_at--150--7871Chr05:12065068..12065092 (25 bp)
GGTATTTGCCGCCATATATGAAGAA
LOC_Os05g20590
OsAffx.14771.1.S1_at--776--51Chr05:12065105..12065129 (25 bp)
ATTGATATTGTTAAGGCGCATGCTG
LOC_Os05g20590
OsAffx.14771.1.S1_at--42--9731Chr05:12065116..12065140 (25 bp)
TAAGGCGCATGCTGAGAAAAACAAT
LOC_Os05g20590
OsAffx.14771.1.S1_at--602--3511Chr05:12065160..12065402 (25 bp)
CATGTGCTAGATATCTGGAGGTGCT
LOC_Os05g20590
OsAffx.14771.1.S1_at--147--5271Chr05:12065466..12065490 (25 bp)
GAATGATAAGTCAAAGGGCCGTGAT
LOC_Os05g20590
OsAffx.14771.1.S1_at--208--7571Chr05:12065481..12065505 (25 bp)
GGGCCGTGATAGTGAGTTCCTAATA
LOC_Os05g20590
OsAffx.14771.1.S1_at--356--7871Chr05:12065552..12065576 (25 bp)
GGTTTGATAGTAGCTTCGACAGTCT
LOC_Os05g20590
OsAffx.14771.1.S1_at--451--4911Chr05:12065564..12065588 (25 bp)
GCTTCGACAGTCTTCTTAAACATTT
LOC_Os05g20590
Target Sequence 
GAGATATGGACATGCTCTAATGGATGTATCATTCGCCGAGGTATTTGCCGCCATATATGAAGAAGTATCTAAATTTATTG
ATATTGTTAAGGCGCATGCTGAGAAAAACAATAAGAGGTGGATATATTGTCCATGTGCTAGATATCTGGAGGTGCTAGTT
GGGTCGGCTAGAGGTTTAGATAATTTTAAAGCTTTGAAGAAGGCAGCGAAGGATGTTTTGAATGATAAGTCAAAGGGCCG
TGATAGTGAGTTCCTAATATTATGGTTGAAGGTGATATTTGGATGGTTTGATAGTAGCTTCGACAGTCTTCTTAAACATT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis