Browse Element(s) Details


OsAffx.14773.2.S1_at

Description tigr:9633.m01882
TID=OsAffx.14773.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2066011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20610NANA5+12070423..12071679retrotransposon protein, putative, unclassified, expressed
LOC_Os05g20620Os.53842.1.S2_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.53842.1.S1_x_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.53842.2.S1_x_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.46610.1.A1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20620OsAffx.22452.1.S1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20620OsAffx.27810.1.S1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20630Os.46610.1.A1_x_at3/115+12080425..12084817hypothetical protein
LOC_Os05g20630OsAffx.3347.1.S1_at1/115+12080425..12084817hypothetical protein
LOC_Os05g20640NANA5+12085539..12085985hypothetical protein
LOC_Os05g20650Os.24831.1.S1_x_at9/115+12092317..12092954retrotransposon protein, putative, unclassified
LOC_Os05g20650Os.24831.3.S1_x_at5/115+12092317..12092954retrotransposon protein, putative, unclassified
LOC_Os05g20650Os.24831.4.S1_x_at2/115+12092317..12092954retrotransposon protein, putative, unclassified
LOC_Os05g20660OsAffx.14773.2.S1_at11/115+12095510..12096947hypothetical protein
LOC_Os05g20660OsAffx.14773.1.S1_at4/115+12095510..12096947hypothetical protein
LOC_Os05g20670NANA5+12098052..12098840retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g20680NANA5+12103527..12107032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20690NANA5+12110981..12112198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20700NANA5+12115858..12117200retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g20710Os.41248.4.S1_x_at3/115+12119908..12126947retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14773.2.S1_at--475--2471Chr05:12096888..12096912 (25 bp)
AACACAAGGTATGGTTTATGCCAAT
LOC_Os05g20660
OsAffx.14773.2.S1_at--120--591Chr05:12096711..12096895 (25 bp)
ATGCCAATATTGGTTTTCTTTCTTG
LOC_Os05g20660
OsAffx.14773.2.S1_at--175--8571Chr05:12096701..12096885 (25 bp)
TGGTTTTCTTTCTTGGTCCTTCAGG
LOC_Os05g20660
OsAffx.14773.2.S1_at--481--10831Chr05:12096689..12096713 (25 bp)
TTGGTCCTTCAGGTTTCCTACTGCA
LOC_Os05g20660
OsAffx.14773.2.S1_at--258--3731Chr05:12096676..12096696 (21 bp)
CTACTGCACTGTTCCAGTCGGAAAA
LOC_Os05g20660
OsAffx.14773.2.S1_at--921--2271Chr05:12096205..12096229 (25 bp)
AAATGTTAAGTTTCACCAGTGTACT
LOC_Os05g20660
OsAffx.14773.2.S1_at--79--1731Chr05:12096191..12096215 (25 bp)
ACCAGTGTACTGGATCTCGGTCTTA
LOC_Os05g20660
OsAffx.14773.2.S1_at--519--7811Chr05:12096173..12096197 (25 bp)
GGTCTTACATTGCAGCAGCCTACAT
LOC_Os05g20660
OsAffx.14773.2.S1_at--466--1511Chr05:12096046..12096184 (25 bp)
AGCAGCCTACATCGCGAAGCAAGAA
LOC_Os05g20660
OsAffx.14773.2.S1_at--520--5911Chr05:12096006..12096030 (25 bp)
GAGCTCACTGCAATTGATCTATTCA
LOC_Os05g20660
OsAffx.14773.2.S1_at--362--131Chr05:12095986..12096010 (25 bp)
ATTCAAGTTGACACATTGCAGCAAA
LOC_Os05g20660
Target Sequence 
AACACAAGGTATGGTTTATGCCAATATTGGTTTTCTTTCTTGGTCCTTCAGGTTTCCTACTGCACTGTTCCAGTCGGAAA
AATGTGCAAAGCTGAAACAGAACCGTGAAAATGTTAAGTTTCACCAGTGTACTGGATCTCGGTCTTACATTGCAGCAGCC
TACATCGCGAAGCAAGAAAAATACAAAGATACAGAGCTCACTGCAATTGATCTATTCAAGTTGACACATTGCAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14773.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis