Browse Element(s) Details


OsAffx.14789.1.S1_at

Description tigr:9633.m02090
TID=OsAffx.14789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2356010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23540OsAffx.4404.1.S1_at10/115+13408299..13411513hypothetical protein
LOC_Os05g23540OsAffx.707.1.S1_at2/115+13408299..13411513hypothetical protein
LOC_Os05g23550OsAffx.4404.1.S1_at10/115+13417374..13422690hypothetical protein
LOC_Os05g23550OsAffx.707.1.S1_at2/115+13417374..13422690hypothetical protein
LOC_Os05g23560OsAffx.14789.1.S1_at10/115+13433843..13434206hypothetical protein
LOC_Os05g23570OsAffx.12420.1.S1_at1/115+13439065..13439730hypothetical protein
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23600Os.11245.1.S2_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23600Os.11245.1.S1_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14789.1.S1_at--857--6271Chr05:13434149..13434173 (25 bp)
GATGTCAATTCTAGCATAGTATCTT
LOC_Os05g23560
OsAffx.14789.1.S1_at--981--4951Chr05:13434136..13434160 (25 bp)
GCATAGTATCTTTCAATAGTTCCAA
LOC_Os05g23560
OsAffx.14789.1.S1_at--870--3091Chr05:13434122..13434146 (25 bp)
AATAGTTCCAACCTTCTGGCTGAGC
LOC_Os05g23560
OsAffx.14789.1.S1_at--467--3651Chr05:13434110..13434134 (25 bp)
CTTCTGGCTGAGCAACTCTTGGATT
LOC_Os05g23560
OsAffx.14789.1.S1_at--620--5951NONE
GAGCAACTCTTGGATTTAGAGGAAA
NONE
OsAffx.14789.1.S1_at--62--5451Chr05:13433967..13433991 (25 bp)
GAACCCTTGAAGCAGTAGAGATGAT
LOC_Os05g23560
OsAffx.14789.1.S1_at--28--10831Chr05:13433940..13433964 (25 bp)
TTGGAGTGAACATTCAAGACCGGGT
LOC_Os05g23560
OsAffx.14789.1.S1_at--125--11Chr05:13433924..13433948 (25 bp)
AGACCGGGTGAAGAACCAAACCATG
LOC_Os05g23560
OsAffx.14789.1.S1_at--428--2631Chr05:13433906..13433930 (25 bp)
AACCATGGCAAAGGAATTGACTAAT
LOC_Os05g23560
OsAffx.14789.1.S1_at--681--251Chr05:13433883..13433907 (25 bp)
ATATGAATATGCTACTGCAGGGACA
LOC_Os05g23560
OsAffx.14789.1.S1_at--339--4851Chr05:13433873..13433897 (25 bp)
GCTACTGCAGGGACAAGTATTTGAT
LOC_Os05g23560
Target Sequence 
GATGTCAATTCTAGCATAGTATCTTTCAATAGTTCCAACCTTCTGGCTGAGCAACTCTTGGATTTAGAGGAAAAGAGAAC
CCTTGAAGCAGTAGAGATGATTATTGGAGTGAACATTCAAGACCGGGTGAAGAACCAAACCATGGCAAAGGAATTGACTA
ATATGAATATGCTACTGCAGGGACAAGTATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis