Browse Element(s) Details


OsAffx.14830.1.S1_at

Description tigr:9633.m02308
TID=OsAffx.14830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2563011/11inhibitor I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25590OsAffx.24052.1.S1_at1/115+14795825..14796469hypothetical protein
LOC_Os05g25600Os.14637.1.S1_at11/115+14800284..14808285expressed protein
LOC_Os05g25600Os.46613.1.S2_at1/115+14800284..14808285expressed protein
LOC_Os05g25600Os.38273.2.S1_x_at1/115+14800284..14808285expressed protein
LOC_Os05g25610OsAffx.29697.1.S1_at1/115+14809903..14813564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25620OsAffx.27012.1.S1_at10/115+14815312..14816168expressed protein
LOC_Os05g25630OsAffx.14830.1.S1_at11/115+14819319..14819806inhibitor I family protein
LOC_Os05g25640Os.53884.1.S1_at11/115+14821903..14826462Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os05g25650NANA5+14828581..14828877expressed protein
LOC_Os05g25660OsAffx.18481.2.A1_at11/115+14843308..14844057hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14830.1.S1_at--959--3831Chr05:14819352..14819376 (25 bp)
CTGCTGCCTATTCTACTAGTTCTAA
LOC_Os05g25630
OsAffx.14830.1.S1_at--219--4791Chr05:14819354..14819378 (25 bp)
GCTGCCTATTCTACTAGTTCTAATT
LOC_Os05g25630
OsAffx.14830.1.S1_at--81--4451Chr05:14819357..14819381 (25 bp)
GCCTATTCTACTAGTTCTAATTTCA
LOC_Os05g25630
OsAffx.14830.1.S1_at--134--191Chr05:14819376..14819400 (25 bp)
ATTTCAACCACATGTATACTAGCTG
LOC_Os05g25630
OsAffx.14830.1.S1_at--988--2631Chr05:14819381..14819405 (25 bp)
AACCACATGTATACTAGCTGCAGAT
LOC_Os05g25630
OsAffx.14830.1.S1_at--518--6891Chr05:14819389..14819413 (25 bp)
GTATACTAGCTGCAGATGAGCCATG
LOC_Os05g25630
OsAffx.14830.1.S1_at--926--5031Chr05:14819400..14819424 (25 bp)
GCAGATGAGCCATGTACGGCACCGC
LOC_Os05g25630
OsAffx.14830.1.S1_at--591--691Chr05:14819404..14819428 (25 bp)
ATGAGCCATGTACGGCACCGCCTTG
LOC_Os05g25630
OsAffx.14830.1.S1_at--328--6991Chr05:14819413..14819436 (24 bp)
GTACGGCACCGCCTTGTCAAGGAAA
LOC_Os05g25630
OsAffx.14830.1.S1_at--374--3931Chr05:14819416..14819436 (21 bp)
CGGCACCGCCTTGTCAAGGAAAGCA
LOC_Os05g25630
OsAffx.14830.1.S1_at--523--8731Chr05:14819427..14819606 (25 bp)
TGTCAAGGAAAGCAGACATGGCCAG
LOC_Os05g25630
Target Sequence 
CTGCTGCCTATTCTACTAGTTCTAATTTCAACCACATGTATACTAGCTGCAGATGAGCCATGTACGGCACCGCCTTGTCA
AGGAAAGCAGACATGGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis