Browse Element(s) Details


OsAffx.14866.1.S1_at

Description tigr:9633.m02617
TID=OsAffx.14866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2861011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28540Os.20627.3.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28540OsAffx.1646.1.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_at2/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_x_at1/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28560OsAffx.10496.1.S1_at1/115+16646996..16649855retrotransposon protein, putative, unclassified
LOC_Os05g28570OsAffx.14863.1.S1_at11/115+16651440..16652916hypothetical protein
LOC_Os05g28580OsAffx.14864.1.S1_at8/115+16654193..16654894hypothetical protein
LOC_Os05g28590OsAffx.14865.1.S1_at9/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.22240.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.8338.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.20733.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28590OsAffx.9790.1.S1_x_at1/115+16658126..16660665retrotransposon protein, putative, unclassified
LOC_Os05g28600NANA5+16661467..16663891transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28610OsAffx.14866.1.S1_at11/115+16668269..16669243hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14866.1.S1_at--983--4591Chr05:16669188..16669212 (25 bp)
GCGACGATATTGATGGTGCCCTACC
LOC_Os05g28610
OsAffx.14866.1.S1_at--448--4531Chr05:16669171..16669195 (25 bp)
GCCCTACCCGATCACTTAGTAAAGG
LOC_Os05g28610
OsAffx.14866.1.S1_at--590--7351Chr05:16669098..16669122 (25 bp)
GTGACTTATTGGTTTCCACTAGAAA
LOC_Os05g28610
OsAffx.14866.1.S1_at--966--2232Chr10:12919383..12919670 (25 bp)
AAATTTCGGCAATTCACTTGGGCAA
NONE
OsAffx.14866.1.S1_at--524--1191Chr05:16668448..16668472 (25 bp)
ACTTGGGCAAACTCACTTCCTATAC
LOC_Os05g28610
OsAffx.14866.1.S1_at--1035--9671Chr05:16668436..16668460 (25 bp)
TCACTTCCTATACCGACATACGAGA
LOC_Os05g28610
OsAffx.14866.1.S1_at--826--8631Chr05:16668381..16668405 (25 bp)
TGGGAATCCATATACCCTCTGGTTT
LOC_Os05g28610
OsAffx.14866.1.S1_at--1150--6831Chr05:16668360..16668384 (25 bp)
GTTTCGGTCCATGCTCTAGATATAG
LOC_Os05g28610
OsAffx.14866.1.S1_at--873--7711Chr05:16668333..16668357 (25 bp)
GGGTGTCATATCACATGCCTATGTT
LOC_Os05g28610
OsAffx.14866.1.S1_at--710--3531Chr05:16668320..16668344 (25 bp)
CATGCCTATGTTCCTTGACACAGAG
LOC_Os05g28610
OsAffx.14866.1.S1_at--818--10751Chr05:16668306..16668330 (25 bp)
TTGACACAGAGGAAGCGGCTTTCGC
LOC_Os05g28610
Target Sequence 
GCGACGATATTGATGGTGCCCTACCCGATCACTTAGTAAAGGATATTTCAGAGATTGATATGGAGGATGTGGACCAAAGT
AACAAAATTTGTGACTTATTGGTTTCCACTAGAAAATCTAAATCATCTTCAAAAAGAAAAGAGCGAAAGACTCGTCCCAA
AAATCCAAAAAAACACCAAAATGGTTTCGTCATGATAGGTATCTTTTGGAATTGCAGAGGTCTTTCAGATTTGACTAAAT
TTCGGCAATTCACTTGGGCAAACTCACTTCCTATACCGACATACGAGAAGCTAGAAAGGATCCTCACTTCCATAGAAATG
GGAATCCATATACCCTCTGGTTTCGGTCCATGCTCTAGATATAGAGGGGTGTCATATCACATGCCTATGTTCCTTGACAC
AGAGGAAGCGGCTTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis