Browse Element(s) Details


OsAffx.14921.1.S1_x_at

Description tigr:9633.m02982
TID=OsAffx.14921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3254411/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32500Os.5987.1.S1_at11/115+18910449..18914617expressed protein
LOC_Os05g32510NANA5+18916164..18917713retrotransposon protein, putative, unclassified
LOC_Os05g32520NANA5+18918331..18921033hypothetical protein
LOC_Os05g32530Os.18718.1.S1_at3/115+18927734..18936628endo-beta-mannosidase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_x_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544Os.17807.1.S1_at10/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.17881.1.S1_at1/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32560Os.24864.1.S1_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32560Os.9332.2.S1_x_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32570Os.11048.1.A1_at11/115+18972424..18976455expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14921.1.S1_x_at--842--9851Chr05:18946388..18946412 (25 bp)
TACACCGGGAACGTGTACCATGAGT
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--558--8751Chr05:18946375..18946399 (25 bp)
TGTACCATGAGTTCAGCGACGGGCT
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--207--7411Chr05:18946307..18946331 (25 bp)
GTGTTCGTCGTCCTCGAGTACCACT
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--1062--6071Chr05:18946292..18946316 (25 bp)
GAGTACCACTACTGGTGGCTGGGCC
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--1105--5871Chr05:18946250..18946274 (25 bp)
GAGCGCCTCACCAACTACAAGGTGG
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--148--9851Chr05:18946235..18946259 (25 bp)
TACAAGGTGGTCGACTTCCGCTACG
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--1080--1971Chr05:18946198..18946222 (25 bp)
ACTGCTTCTCCGAGATGATCGTCGG
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--558--3971Chr05:18945325..18945349 (25 bp)
CGGGCGAGATAATGGCGCAGATTAT
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--419--5031Chr05:18945309..18945333 (25 bp)
GCAGATTATAATACGCCGCGGTGGA
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--807--2351Chr05:18945216..18945240 (25 bp)
AAAGCGGGTTTGTTCCTCACAAATG
LOC_Os05g32544
OsAffx.14921.1.S1_x_at--987--3971Chr05:18945171..18945195 (25 bp)
CGGTGGTCGCATCGGCCAGCCAATC
LOC_Os05g32544
Target Sequence 
TACACCGGGAACGTGTACCATGAGTTCAGCGACGGGCTGATCCCGCTGTTCATCACGGCGCAGCGGTTCGCCGGCGAGGT
GGTGTTCGTCGTCCTCGAGTACCACTACTGGTGGCTGGGCCGCTACGGCGCCGTCCTCGAGCGCCTCACCAACTACAAGG
TGGTCGACTTCCGCTACGACCGCCGCGTCCACTGCTTCTCCGAGATGATCGTCGGCCTCCGCATCCACGGCGAGCTCGTC
GTCGACCCCAAGCTCATGCCCAACGGCGCGGGCGAGATAATGGCGCAGATTATAATACGCCGCGGTGGATGGATGGACGG
ATGGGTGAGCGAGTGGATTGGCAAGAAAAGATGGCTTTTGCAAAAGCGCTGCGGGGAAAAGCGGGTTTGTTCCTCACAAA
TGCGGGGGTGCGAGACGGACGCCGGTGGTCGCATCGGCCAGCCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14921.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis