Browse Element(s) Details


OsAffx.14935.1.S1_at

Description tigr:9633.m03060
TID=OsAffx.14935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3329010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14935.1.S1_at--885--1571NONE
AGCTCCTCCCAAAGTTCAAGGTGTG
NONE
OsAffx.14935.1.S1_at--1137--9711Chr05:19428961..19428985 (25 bp)
TCAAGGTGTGATTTCGTGTCGAGCG
LOC_Os05g33290
OsAffx.14935.1.S1_at--1161--7211Chr05:19428944..19428968 (25 bp)
GTCGAGCGGCTTTAGCTAGTGCATC
LOC_Os05g33290
OsAffx.14935.1.S1_at--1085--4851Chr05:19428930..19428954 (25 bp)
GCTAGTGCATCATGGAACTCTGTTA
LOC_Os05g33290
OsAffx.14935.1.S1_at--1050--1371Chr05:19428500..19428524 (25 bp)
AGACCAGAGAGACTATCGTCCCTGA
LOC_Os05g33290
OsAffx.14935.1.S1_at--863--8931Chr05:19428478..19428502 (25 bp)
TGACCCTGACTATCGATTGCCAATT
LOC_Os05g33290
OsAffx.14935.1.S1_at--318--7751Chr05:19428258..19428277 (20 bp)
GGTGTCTTCTTTTGTTCCAGACTAC
LOC_Os05g33290
OsAffx.14935.1.S1_at--791--10791Chr05:19427860..19427883 (24 bp)
TTGTCTTCGATGATGAGGCCCTGGA
LOC_Os05g33290
OsAffx.14935.1.S1_at--747--7551Chr05:19427259..19427283 (25 bp)
GTGGCCACAATTTCCTATCTTGGTT
LOC_Os05g33290
OsAffx.14935.1.S1_at--947--8231Chr05:19427203..19427227 (25 bp)
GGCAAATTCATTTCTTCCCTGTGAT
LOC_Os05g33290
OsAffx.14935.1.S1_at--151--10451Chr05:19427100..19427122 (23 bp)
TTAACGGCCGACAGCTTTATGATGC
LOC_Os05g33290
Target Sequence 
AGCTCCTCCCAAAGTTCAAGGTGTGATTTCGTGTCGAGCGGCTTTAGCTAGTGCATCATGGAACTCTGTTATGCTTGGAA
GAAAGTCGAAGACCAGAGAGACTATCGTCCCTGACCCTGACTATCGATTGCCAATTGTTATACTTGGGATAGCTGGTGCA
TTTGCATATGCAGACAATCTTCTTGCTGCTGCACCTGTAGGCCTACTGGGGTGTCTTCTTTTGTTCCAGACTACTAGAGT
ACGATTTGTCTTCGATGATGAGGCCCTGGAAGTGAAAGTGGGCGATCAGTTAGAGGAGTCAGGTGAAAATGTATTTGTCG
GTGGCAAGAATCGTTGGAGGTACTCAACATTTGTGAATTGGGAACTGTGGTGGCCACAATTTCCTATCTTGGTTTATTTC
AAGGAGACCCAAACAAAACCCGAAGGGCAAATTCATTTCTTCCCTGTGATTTTTAACGGCCGACAGCTTTATGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis