Browse Element(s) Details


OsAffx.14938.1.S1_at

Description tigr:9633.m03067
TID=OsAffx.14938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3335010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33340OsAffx.19542.3.S1_x_at5/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.21754.1.S1_x_at1/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.17151.1.S1_at1/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33350OsAffx.14938.1.S1_at10/115+19500485..19502270hypothetical protein
LOC_Os05g33360Os.8613.1.S1_at10/115+19505254..19507583Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os05g33370Os.14919.1.S1_at6/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370Os.56216.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370OsAffx.29313.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33380Os.2697.1.S1_a_at11/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33380Os.8999.3.S1_x_at2/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14938.1.S1_at--796--3951Chr05:19500516..19500540 (25 bp)
CGGTAGATCGAATTCTTATCGTGGC
LOC_Os05g33350
OsAffx.14938.1.S1_at--200--6391Chr05:19500521..19500545 (25 bp)
GATCGAATTCTTATCGTGGCTTCTC
LOC_Os05g33350
OsAffx.14938.1.S1_at--631--3151Chr05:19500526..19500550 (25 bp)
AATTCTTATCGTGGCTTCTCAGTTT
LOC_Os05g33350
OsAffx.14938.1.S1_at--239--10431Chr05:19500531..19500555 (25 bp)
TTATCGTGGCTTCTCAGTTTTGCTC
LOC_Os05g33350
OsAffx.14938.1.S1_at--746--8491Chr05:19500537..19500561 (25 bp)
TGGCTTCTCAGTTTTGCTCGCGGAA
LOC_Os05g33350
OsAffx.14938.1.S1_at--1074--10551Chr05:19500541..19500565 (25 bp)
TTCTCAGTTTTGCTCGCGGAACCTG
LOC_Os05g33350
OsAffx.14938.1.S1_at--173--10291Chr05:19500549..19500573 (25 bp)
TTTGCTCGCGGAACCTGCTTGTCTG
LOC_Os05g33350
OsAffx.14938.1.S1_at--1140--4531Chr05:19500577..19500601 (25 bp)
GCCCATCGACCATCGGCAACTTGGG
LOC_Os05g33350
OsAffx.14938.1.S1_at--848--8231Chr05:19500591..19500612 (22 bp)
GGCAACTTGGGTTTCATGTGAGACC
LOC_Os05g33350
OsAffx.14938.1.S1_at--505--2071NONE
ACTTGGGTTTCATGTGAGACCATAT
NONE
OsAffx.14938.1.S1_at--1059--1451Chr05:19502180..19502204 (25 bp)
AGAAGGTGGTGACATCGCCGCGTGT
LOC_Os05g33350
Target Sequence 
CGGTAGATCGAATTCTTATCGTGGCTTCTCAGTTTTGCTCGCGGAACCTGCTTGTCTGCTCGCCCATCGACCATCGGCAA
CTTGGGTTTCATGTGAGACCATATATTAATAGTATAGTGGGGAGGAGGCTGGCGGGGTGGGCCGAGGCAGGAGAAGAGGA
GGGCGTCGGCAGCCGGCAACGCAGCGGCGGCGGCCGGAGTGGCGGCAACGACGACGCCGGAGAAGGTGGTGACATCGCCG
CGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis